View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19269_high_3 (Length: 607)
Name: NF19269_high_3
Description: NF19269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19269_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 9 - 592
Target Start/End: Complemental strand, 26381193 - 26380610
Alignment:
| Q |
9 |
acatcatcatcatcaaatacaaaactcctactactattttcacttctactaggcaaatgagaaacttgaggaatcactgcctcttgtgagtgtgaaactg |
108 |
Q |
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| T |
26381193 |
acatcatcatcatcaaatacaaaactcctactactattttcacttctactaggcaaatgagaaacttgaggaatcaccgcctcttgtgagtgtgaaactg |
26381094 |
T |
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| Q |
109 |
aaaactttctaccaccaccaccaacaccactaccagccaacaatgaattattgcactcatttttcatgtcattctcttgaaagataaaactattatcaca |
208 |
Q |
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| T |
26381093 |
aaaactttctaccaccaccaccaacaccactaccagccaacaatgaattattgcactcatttttcatgtcattctcttgaaagataaaactattatcaca |
26380994 |
T |
|
| Q |
209 |
tttaaaagccactggttcctcaataggtctagtaggataaagagattgaggaagctgttgaagtcccctattggaaggaaaataaagtggtgttgaagga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26380993 |
tttaaaagccactggttcctcaataggtctagtaggataaagagattgaggaagctgttgaagtcccctattagaaggaaaataaagtggtgttgaagga |
26380894 |
T |
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| Q |
309 |
acattgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380893 |
acattgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtg |
26380794 |
T |
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| Q |
409 |
aaggatacacaacatgttgttcataagggttataaggcgaagaaaaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataaca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380793 |
aaggatacacaacatgttgttcataagggttataaggcgaagaaaaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataaca |
26380694 |
T |
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| Q |
509 |
aactccatgaccataaggagcattgtttccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttg |
592 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380693 |
aactccattaccataaggaacattgtttccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttg |
26380610 |
T |
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