View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19269_high_5 (Length: 470)
Name: NF19269_high_5
Description: NF19269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19269_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 47624463 - 47624932
Alignment:
| Q |
1 |
aatatgccaacagctagtgagtgctcgattgtttcacatttttctttgcttacnnnnnnnnntaacaagtgagtgcactattcatcggtcttcaaatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
47624463 |
aatatgccaacagctagtgagtgctcgattgtttcacacttttctttgcttacaaaaaaaaataacaagtgagtgctctattcatcggtcttcaaatgtt |
47624562 |
T |
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| Q |
101 |
aatcaagctttgttaagccgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624563 |
aatcaagctttgttaagctgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgc |
47624662 |
T |
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| Q |
201 |
agtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624663 |
agtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgctt |
47624762 |
T |
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| Q |
301 |
gtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624763 |
gtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattg |
47624862 |
T |
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| Q |
401 |
agtaattttatcttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaacc |
470 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624863 |
agcaattttatcttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaacc |
47624932 |
T |
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