View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19269_high_8 (Length: 346)
Name: NF19269_high_8
Description: NF19269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19269_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 78 - 327
Target Start/End: Original strand, 40547019 - 40547272
Alignment:
| Q |
78 |
ttttgacatgtacaaatgtttgtgtttgtgtatattcattttcatacattttcacaggttgactatgcactagctgatcgatttcaaactatcgaagaca |
177 |
Q |
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| T |
40547019 |
ttttgacatgtacaaatgtttgtgtttgtgtatattcattttcatacattttcacacgttgactatgcactagctgatcgatttcaaactatcgaagaca |
40547118 |
T |
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| Q |
178 |
tgaagaaactcaaatacacaacttgagtgataacaatgtataaagatgacaactccagtcatgtttgaattcattattttatgaagc----tatgctgtt |
273 |
Q |
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| T |
40547119 |
tgaagaaactcaaatacacaacttgagtgatgacaatgtataaagatgacaactccagtcatgtttgaattcattattttatgaagctatatatgctgtt |
40547218 |
T |
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| Q |
274 |
tccttttatatatgtctatatattcttctgcctattagaatctttaaagctcac |
327 |
Q |
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| T |
40547219 |
tccttttatatatgtctatatattcttgtgcctattagaatctttagagctcac |
40547272 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40546827 - 40546899
Alignment:
| Q |
1 |
tatccttgatagaggttttgttggattagggagagatgatcaccaatagtgtaagattagggacttgagtatg |
73 |
Q |
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| T |
40546827 |
tatccttgatagaggttttgttggattagggatagatgatcaccaatagtgtaagattagggacttgagtatg |
40546899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 30157872 - 30157785
Alignment:
| Q |
121 |
atacattttcacaggttgactatgcactagctgatcgatttcaaactatcgaagacatgaagaaactcaaatacacaacttgagtgat |
208 |
Q |
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| T |
30157872 |
atacattttcacaggttgactctgtacttggtgaccgatttccaactattgaagacatgaagaaacttaaatatacaactcgagtgat |
30157785 |
T |
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