View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19269_low_10 (Length: 312)

Name: NF19269_low_10
Description: NF19269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19269_low_10
NF19269_low_10
[»] chr5 (17 HSPs)
chr5 (78-295)||(1600076-1600292)
chr5 (71-295)||(9074502-9074724)
chr5 (71-295)||(8535606-8535831)
chr5 (71-286)||(8641476-8641701)
chr5 (78-295)||(8529055-8529267)
chr5 (66-286)||(8644312-8644530)
chr5 (71-280)||(2856681-2856891)
chr5 (71-280)||(2874291-2874501)
chr5 (78-286)||(8636979-8637185)
chr5 (79-280)||(2844854-2845056)
chr5 (108-195)||(8547986-8548073)
chr5 (71-140)||(8677919-8677988)
chr5 (61-132)||(2904938-2905009)
chr5 (238-295)||(2904782-2904839)
chr5 (108-191)||(9003602-9003685)
chr5 (156-189)||(2904881-2904914)
chr5 (159-286)||(8678007-8678132)
[»] chr7 (2 HSPs)
chr7 (78-295)||(48361628-48361846)
chr7 (72-282)||(35779934-35780130)
[»] chr4 (1 HSPs)
chr4 (78-295)||(9443216-9443428)
[»] scaffold0627 (1 HSPs)
scaffold0627 (80-195)||(4761-4876)
[»] chr6 (2 HSPs)
chr6 (71-195)||(16716451-16716575)
chr6 (245-282)||(16716647-16716684)
[»] chr1 (3 HSPs)
chr1 (78-147)||(26324195-26324264)
chr1 (160-192)||(5130964-5130996)
chr1 (239-286)||(5131041-5131088)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 78 - 295
Target Start/End: Complemental strand, 1600292 - 1600076
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  1600292 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggt--agtcacaaatgtaaagaaatccct 1600195  T
Q  178 ttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctctcactttc 276  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1600194 ttaattctcccatgctaacatggctgttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttc 1600095  T
Q  277 aaaacagaaaaccaatatt 295  Q
    |||||||||||||||||||    
T  1600094 aaaacagaaaaccaatatt 1600076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 9074724 - 9074502
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaaga 170  Q
    |||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  9074724 atcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaaga 9074625  T
Q  171 aatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctct 269  Q
    |||||||||||||||||||||   | ||| |||||| ||  | ||||| ||||||| ||||| ||| |||| ||||||||||||||||||||||||||||    
T  9074624 aatccctttaattctcccatg---atatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctct 9074528  T
Q  270 cactttcaaaacagaaaaccaatatt 295  Q
    |||||||||||||||||| |||||||    
T  9074527 cactttcaaaacagaaaaacaatatt 9074502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 71 - 295
Target Start/End: Original strand, 8535606 - 8535831
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaaga 170  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  8535606 atcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaaga 8535705  T
Q  171 aatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctct 269  Q
    ||||||||||||||||||||||||| ||| || |||| | ||  |||||||||||||||||| |||   |||||||||||||||||||||| || | |||    
T  8535706 aatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatgacttcagcgtct 8535805  T
Q  270 cactttcaaaacagaaaaccaatatt 295  Q
    |||||||||| ||||||| |||||||    
T  8535806 cactttcaaagcagaaaatcaatatt 8535831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 286
Target Start/End: Original strand, 8641476 - 8641701
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcac------aaatg 164  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||  |||||| | ||||||||| ||||||      |||||    
T  8641476 atcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaatg 8641575  T
Q  165 taaagaaatccctttaattctcccatgctaacatggctgttaccacgagttcc---attattatgatttcc-aactcatgtggaggagaaggaaatgact 260  Q
    ||| ||||||||||||| ||||||||||||| | | ||||||||| || ||||   ||||||||||||||| ||| |||||||||||||||||||| |||    
T  8641576 taaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataact 8641675  T
Q  261 gcaacctctcactttcaaaacagaaa 286  Q
     ||| ||||||||||| |||||||||    
T  8641676 tcaatctctcactttccaaacagaaa 8641701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 78 - 295
Target Start/End: Original strand, 8529055 - 8529267
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccct 177  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||||   ||||||||||| ||||||||||    
T  8529055 ttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccct 8529154  T
Q  178 ttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctctcactttc 276  Q
    |||||||||||||||||| | | |   ||| || |     |  |||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||    
T  8529155 ttaattctcccatgctaataggcc---tacaacaa---aaaacattatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcattttc 8529248  T
Q  277 aaaacagaaaaccaatatt 295  Q
    ||| |||||||||||||||    
T  8529249 aaagcagaaaaccaatatt 8529267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 8644312 - 8644530
Alignment:
Q  66 aaaggatcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gataaaaaggtccagtcacaaatg 164  Q
    |||| |||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||| || || ||  |  | || ||||||    
T  8644312 aaagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatatgta-tcgcaaatg 8644410  T
Q  165 taaagaaatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaactcatgtggaggagaaggaaatgactgcaa 264  Q
    ||||| |||||| ||||||||||||||| || | |   ||||| ||||  ||||||||| ||||||  ||  ||  |||||||||||||||||| |||||    
T  8644411 taaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaa-aca-ctggaggagaaggaaatgattgcaa 8644508  T
Q  265 cctctcactttcaaaacagaaa 286  Q
    ||||||||||||||||||||||    
T  8644509 cctctcactttcaaaacagaaa 8644530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 280
Target Start/End: Complemental strand, 2856891 - 2856681
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaaga 170  Q
    |||||| ||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| |||||     | | | |  |  | |||||||||||||    
T  2856891 atcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatgtaaaga 2856792  T
Q  171 aatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaa-ctcatgtggaggagaaggaaatgactgcaacctct 269  Q
    |||||||| ||||||||||  |||| | |  || ||    ||  |||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  2856791 aatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctct 2856692  T
Q  270 cactttcaaaa 280  Q
    |||||||||||    
T  2856691 cactttcaaaa 2856681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 280
Target Start/End: Complemental strand, 2874501 - 2874291
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaaga 170  Q
    |||||| ||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| |||||     | | | |  |  | |||||||||||||    
T  2874501 atcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatgtaaaga 2874402  T
Q  171 aatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaa-ctcatgtggaggagaaggaaatgactgcaacctct 269  Q
    |||||||| ||||||||||  |||| | |  || ||    ||  |||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  2874401 aatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctct 2874302  T
Q  270 cactttcaaaa 280  Q
    |||||||||||    
T  2874301 cactttcaaaa 2874291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 286
Target Start/End: Original strand, 8636979 - 8637185
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gataaaaaggtccagtcacaaatgtaaagaaatccc 176  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |  |||||| |  | |||||||| ||||| ||||||    
T  8636979 ttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacggaaaaaagatgta-tcacaaatataaagtaatccc 8637077  T
Q  177 tttaattctcccatgctaacatggctgttaccacgagttccattattatga-tttccaactcatgtggaggagaaggaaatgactgcaacctctcacttt 275  Q
     |||||||||| |||| || |     ||||  ||||  ||||||||| ||| |||  ||| |   |||||||||||||||||| |||||||||||| |||    
T  8637078 cttaattctccaatgcgaatacactcgttatgacgaaatccattattttgattttgtaacac---tggaggagaaggaaatgattgcaacctctcatttt 8637174  T
Q  276 caaaacagaaa 286  Q
    | |||||||||    
T  8637175 ctaaacagaaa 8637185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 280
Target Start/End: Complemental strand, 2845056 - 2844854
Alignment:
Q  79 tgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacat-cagataaaaaggtccagtcacaaatgtaaagaaatccct 177  Q
    |||||||  |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |  |  | | | |  | | ||||||||||||||||||||    
T  2845056 tgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatata-tgacaaatgtaaagaaatccct 2844958  T
Q  178 ttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaa-ctcatgtggaggagaaggaaatgactgcaacctctcactttc 276  Q
    | ||||||||||  |||| | |  || ||    ||  |||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  2844957 tcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttc 2844858  T
Q  277 aaaa 280  Q
    ||||    
T  2844857 aaaa 2844854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 8548073 - 8547986
Alignment:
Q  108 ccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaa 195  Q
    |||||||| |||||||||||||||| ||||| ||| | | || |||||||||||||||||||| |||||||||||||||||| |||||    
T  8548073 ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaa 8547986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 8677919 - 8677988
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca 140  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||    
T  8677919 atcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatca 8677988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 2905009 - 2904938
Alignment:
Q  61 tgagaaaaggatcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattg 132  Q
    ||||| ||| |||||| ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  2905009 tgagataagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 2904839 - 2904782
Alignment:
Q  238 atgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatatt 295  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| ||||  |||||||    
T  2904839 atgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatatt 2904782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 9003602 - 9003685
Alignment:
Q  108 ccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatg 191  Q
    ||||| ||||||||||||||  ||| ||||||| | | | |||   ||||||||||||||||||||||| ||||||||||||||    
T  9003602 ccatactccttcataacccaagttgcaacatcaaagagagaggatgagtcacaaatgtaaagaaatccccttaattctcccatg 9003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 2904914 - 2904881
Alignment:
Q  156 tcacaaatgtaaagaaatccctttaattctccca 189  Q
    ||||||||||||||||||||||| ||||||||||    
T  2904914 tcacaaatgtaaagaaatcccttcaattctccca 2904881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 8678007 - 8678132
Alignment:
Q  159 caaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaactcatgtggaggagaaggaaatga 258  Q
    ||||||||||| |||||  |||||| |||||||  || | |  |||||| ||||  ||||||||||||||||  || |  ||  ||||||||||||||||    
T  8678007 caaatgtaaagtaatcctcttaattttcccatgtgaatacgcttgttacaacgaaatccattattatgattttgaaatactg--gaggagaaggaaatga 8678104  T
Q  259 ctgcaacctctcactttcaaaacagaaa 286  Q
     |||||| ||||| |||| |||||||||    
T  8678105 ttgcaacttctcagtttctaaacagaaa 8678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 78 - 295
Target Start/End: Complemental strand, 48361846 - 48361628
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccct 177  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||    
T  48361846 ttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatccct 48361747  T
Q  178 ttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctctcactttc 276  Q
    |||||||||||||||||| ||| ||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  48361746 ttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgcaccctctcactttc 48361647  T
Q  277 aaaacagaaaaccaatatt 295  Q
    ||||||||||| |||||||    
T  48361646 aaaacagaaaaacaatatt 48361628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 35779934 - 35780130
Alignment:
Q  72 tcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaa 171  Q
    ||||| ||||||||||||||||| ||||||||||||||||  || |||||||||||||||| |||||||   |||||  || ||||||||||||||||||    
T  35779934 tcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaa 35780033  T
Q  172 atccctttaattctcccatgctaacatggctgttaccacgagttccattattatgatttccaactcatgtggaggagaaggaaatgactgcaacctctca 271  Q
    |||||||||||||||||||||||| | | || ||| || || |||||              ||| ||||||||||||||||||||| |||||||||||||    
T  35780034 atccctttaattctcccatgctaatacgcctattatcatgaattcca--------------aacacatgtggaggagaaggaaatggctgcaacctctca 35780119  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 295
Target Start/End: Original strand, 9443216 - 9443428
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccct 177  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||||   ||||||||||| ||||||||||    
T  9443216 ttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccct 9443315  T
Q  178 ttaattctcccatgctaacatggctgttaccacgagttccattattatgatttcc-aactcatgtggaggagaaggaaatgactgcaacctctcactttc 276  Q
    |||||||||||||||||| | | ||  ||| |        |  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  9443316 ttaattctcccatgctaataggcctactacaa------taaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttc 9443409  T
Q  277 aaaacagaaaaccaatatt 295  Q
    ||| |||||||||||||||    
T  9443410 aaagcagaaaaccaatatt 9443428  T

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Target: scaffold0627 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 4761 - 4876
Alignment:
Q  80 gtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatcccttt 179  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||    |||  || |  ||||||||||||||||||||||||||    
T  4761 gtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttgagtcacaaatgtaaagaaatcccttt 4860  T
Q  180 aattctcccatgctaa 195  Q
    ||||||||||||||||    
T  4861 aattctcccatgctaa 4876  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 16716451 - 16716575
Alignment:
Q  71 atcaattttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaaga 170  Q
    |||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||     || ||| |  ||||| ||||||| |||    
T  16716451 atcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgtataga 16716550  T
Q  171 aatccctttaattctcccatgctaa 195  Q
    |||||||||||||||||||||||||    
T  16716551 aatccctttaattctcccatgctaa 16716575  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 16716647 - 16716684
Alignment:
Q  245 ggagaaggaaatgactgcaacctctcactttcaaaaca 282  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  16716647 ggagaaggaaatgaatgcaacttctcactttcaaaaca 16716684  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 26324264 - 26324195
Alignment:
Q  78 ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaa 147  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||||| ||||||||||||||    
T  26324264 ttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagataaaa 26324195  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 5130964 - 5130996
Alignment:
Q  160 aaatgtaaagaaatccctttaattctcccatgc 192  Q
    |||||||||||||||||||||||||||||||||    
T  5130964 aaatgtaaagaaatccctttaattctcccatgc 5130996  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 5131041 - 5131088
Alignment:
Q  239 tgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaa 286  Q
    |||||||||||||| ||||| ||||| |||||||||||||||| ||||    
T  5131041 tgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaa 5131088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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