View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19269_low_6 (Length: 428)
Name: NF19269_low_6
Description: NF19269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19269_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Original strand, 13130273 - 13130683
Alignment:
| Q |
4 |
cttctcactgatttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgc |
102 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| |
|
|
| T |
13130273 |
cttctcactgatttcaccctttccatatccttcattctttagggcttttaccatgcctaaaaaacattggtccatttcttcatcgctgcacttgctttgc |
13130372 |
T |
|
| Q |
103 |
tctacaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
202 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130373 |
tcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
13130472 |
T |
|
| Q |
203 |
gcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13130473 |
gcaacttccataaactacttggaatgaagtgcctgtataatatcacttcctccatcacaggaagagattctttatacggaatttttctaagctgattaaa |
13130572 |
T |
|
| Q |
303 |
cttgtttggaaggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13130573 |
cttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacatgagctcct |
13130672 |
T |
|
| Q |
403 |
gcttcagatac |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
13130673 |
gcttcagatac |
13130683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Original strand, 13161966 - 13162376
Alignment:
| Q |
4 |
cttctcactgatttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgc |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| || |||||| |
|
|
| T |
13161966 |
cttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttcttcgttgctgcatttgctttgc |
13162065 |
T |
|
| Q |
103 |
tctacaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
202 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162066 |
tcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
13162165 |
T |
|
| Q |
203 |
gcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||| ||||||| |||| |||||||||| |
|
|
| T |
13162166 |
gcaacttccataaactacttggaatgaagtgcctgtaaaatatcacttcctccatcacaggaagagattttttataaggaatttctctaagctgattaaa |
13162265 |
T |
|
| Q |
303 |
cttgtttggaaggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcct |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
13162266 |
cttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcct |
13162365 |
T |
|
| Q |
403 |
gcttcagatac |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
13162366 |
gcttcagatac |
13162376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Original strand, 13094844 - 13095254
Alignment:
| Q |
4 |
cttctcactgatttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
13094844 |
cttctcactgatttctccctttccatgtccttcattctttagggcttttaccatgcctaaaaaacattggtacatttcttcatagctgcacttactttgc |
13094943 |
T |
|
| Q |
103 |
tctacaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
202 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094944 |
tcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccattttt |
13095043 |
T |
|
| Q |
203 |
gcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||| | |||||| ||||||| | || | |||||||| |
|
|
| T |
13095044 |
gcaacttccataaactacttggaatgaagtgcctgtaaaaaatcacttcctccatcacaggaagagagtttttataaggaatttctataaggtgattaaa |
13095143 |
T |
|
| Q |
303 |
cttgtttggaaggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
13095144 |
cttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcct |
13095243 |
T |
|
| Q |
403 |
gcttcagatac |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
13095244 |
gcttcagatac |
13095254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 136 - 413
Target Start/End: Original strand, 14708007 - 14708284
Alignment:
| Q |
136 |
aagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcc |
235 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||||||| |||||||||| | || |||||||||||||||| ||||||||||| || |||||| ||||||| |
|
|
| T |
14708007 |
aagaatcggtcgagattttcgtgggctaccttgaatttcttctcttatctaatattgagccatttttgctgcttccataaacaacatggaataaagtgcc |
14708106 |
T |
|
| Q |
236 |
tgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaaggcaatttggatcaaatccaaa |
335 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||| | ||| | ||||| |||| ||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14708107 |
tgtacaatatcacttcctccatcacagggagagattttagataagaaatttctctaagctcactaaacttgtttggaaaacaatttggatcaaatccaaa |
14708206 |
T |
|
| Q |
336 |
taaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcctgcttcagatac |
413 |
Q |
| |
|
|| ||| || || |||| ||||| ||||||||||| ||| ||||||| |||||| | ||||| ||| |||| ||||| |
|
|
| T |
14708207 |
tacaatggtgaagatgctgtcaaaagtgaacctattcaagacatcttgtaaatccacctgagcacctacttctgatac |
14708284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 114 - 410
Target Start/End: Complemental strand, 13067812 - 13067518
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacatt--gagccatttttgcaacttcc |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| || ||||||||| |||||||||||||| || |||||||||| ||| ||||||| || ||||| |
|
|
| T |
13067812 |
ggaaaatgttatgctttcatacaagaatcgttcaatattttcttgggctaccttgaacttcttttcatgaccaacatatggagtcattttttcagcttcc |
13067713 |
T |
|
| Q |
212 |
ataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttgg |
311 |
Q |
| |
|
||| | | |||||||||||||| |||| |||||||||||| | |||| || | ||||| |||||||| ||||| |||| ||| ||||||||| ||||| |
|
|
| T |
13067712 |
atagataatttggaatgaagtgcttgtacaatatcacttcccctatcatagttagagattttttatacgcaatttctctaagctcattaaacttatttgg |
13067613 |
T |
|
| Q |
312 |
aaggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcctgcttcaga |
410 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||| ||||| ||||||||| | |||||||||||||| ||| | |||| ||||||||||| |
|
|
| T |
13067612 |
aaggcaattaggatcaaatccaaatataatggtgcagaggctat----agtgaacctactcaaggcatcttgcaagtccacctgagaacctgcttcaga |
13067518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 114 - 380
Target Start/End: Original strand, 13205015 - 13205281
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccat |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| ||| || | |||||||| ||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
13205015 |
ggaaaatgttatactttcatataagaatcggtcaagattttcttcggcttcccttaacttcttttcttgaccaacatggagccatttttgtagcttccat |
13205114 |
T |
|
| Q |
214 |
aaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaa |
313 |
Q |
| |
|
| | ||||||||||||||||| ||| | |||||| || || ||||| | || || || || ||| | ||||| | | ||| ||||||||||||||||| |
|
|
| T |
13205115 |
agaaaacttggaatgaagtgccggtacattatcacctcatctatcactgtaagagctttttgataagcaatttctgttagctcattaaacttgtttggaa |
13205214 |
T |
|
| Q |
314 |
ggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatc |
380 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||| | |||||||| |
|
|
| T |
13205215 |
ggcaattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatc |
13205281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 380
Target Start/End: Complemental strand, 13069824 - 13069558
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccat |
213 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| ||||| ||| || | |||||||| ||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
13069824 |
ggaaaatgttataccttcatacaagaaacggtcaagattttcttcggcttcccttaacttcttttcttgacgaacatggagccatttttgcagcttccaa |
13069725 |
T |
|
| Q |
214 |
aaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaa |
313 |
Q |
| |
|
| | ||||||||||||||||| ||| |||||||| || || ||||||| || ||||| || ||| ||||| | | ||| ||||||||||||| ||| |
|
|
| T |
13069724 |
agataacttggaatgaagtgccggtacaatatcacctcatctatcacagcaagagatttttgataatcaatttctgttagctcattaaacttgtttagaa |
13069625 |
T |
|
| Q |
314 |
ggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatc |
380 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||| | |||||||| |
|
|
| T |
13069624 |
ggcaattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatc |
13069558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 117 - 413
Target Start/End: Complemental strand, 30367738 - 30367442
Alignment:
| Q |
117 |
aaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccataaa |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || |||||| ||||||| |||||||||||| | |||||| |||| ||||||||| |
|
|
| T |
30367738 |
aaatgttacactttcatacaagaatcggtcaagattttcttcagctaccttgtacttcttttcttgaccaacaagaaaccatttctgcagcttccataag |
30367639 |
T |
|
| Q |
217 |
ctacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaaggc |
316 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||| |||||| || ||||| || ||| | ||||| |||| | | | ||| ||| |||||||| | |
|
|
| T |
30367638 |
acactaggaatgaagttcctgtagaatagcacttcctctatcacaataagagatttttgatatgaaatttctctaagatcactaatcttatttggaagcc |
30367539 |
T |
|
| Q |
317 |
aatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcctgcttcagatac |
413 |
Q |
| |
|
|||| | |||||||||||||| ||| |||||| |||| ||||| ||||||||||| ||| ||||||||| ||| | | || |||||||||||||| |
|
|
| T |
30367538 |
aattagaatcaaatccaaatacaataatgcagatgctgtcaaaagtgaacctattcaagatatcttgcaagtccacctcagaacctgcttcagatac |
30367442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 114 - 380
Target Start/End: Original strand, 13007744 - 13008010
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccat |
213 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| || || ||| |||| |||||| | ||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
13007744 |
ggaaaatgttattctttcatacaagaaactgtcaagatttttttcggcttcctttaacttcctttcttgaccaacgtcgagccatttttgcagcttccat |
13007843 |
T |
|
| Q |
214 |
aaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaa |
313 |
Q |
| |
|
| || || ||| ||||||||| ||| | |||||| || || || |||| || ||||| || ||| | ||||| ||| ||| ||||||||||||||||| |
|
|
| T |
13007844 |
agacaacgtggtttgaagtgccggtaaattatcacctcatctataacaggaagagatttttgataagcaatttctcttagctcattaaacttgtttggaa |
13007943 |
T |
|
| Q |
314 |
ggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatc |
380 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| |||| ||||| ||||||||| | |||||||| |
|
|
| T |
13007944 |
ggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactcaaggcatc |
13008010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 413
Target Start/End: Original strand, 13101544 - 13101843
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccat |
213 |
Q |
| |
|
|||||| || ||||||||||||||||| | |||||||| ||||| ||| || | | |||| | || |||||||| |||||||||||||||| ||||||| |
|
|
| T |
13101544 |
ggaaaacgtaatactttcatacaagaacctgtcaagattttcttcggcttcccttagcttcctttcatgaccaacgttgagccatttttgcagcttccat |
13101643 |
T |
|
| Q |
214 |
aaactacttggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaa |
313 |
Q |
| |
|
| | |||||| |||||||| | ||| | |||||| || |||||||||| || ||||| || ||| | ||| | ||| ||| ||||||||||||||||| |
|
|
| T |
13101644 |
agataacttggtatgaagtgtcggtaaattatcacctcatccatcacaggaagagatttttgataagcaatatccctaagctcattaaacttgtttggaa |
13101743 |
T |
|
| Q |
314 |
ggcaatttggatcaaatccaaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcctgcttcagatac |
413 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| |||| ||||| ||||||||| ||||| |||| | || ||| ||||||| ||| ||||||||| |
|
|
| T |
13101744 |
ggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactaaagacatcctccaggtccacatgagcacctatttcagatac |
13101843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 410
Target Start/End: Original strand, 13010922 - 13011085
Alignment:
| Q |
247 |
acttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcatgc |
346 |
Q |
| |
|
|||||||| |||||| || ||| | |||||| | ||||| |||| ||| | |||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
13010922 |
acttcctctatcacactaagagaatttttataagcaatttctctaagctcactaaacttgtttggaaggcaattaggatcaaatccaaatacaacggtgc |
13011021 |
T |
|
| Q |
347 |
agctgctatcaaaggtgaacctattaaaggcatcttgcaaatccgcatgagctcctgcttcaga |
410 |
Q |
| |
|
|| ||| ||||| || |||||| | |||| ||||||||| ||| | |||| ||||||||||| |
|
|
| T |
13011022 |
agaggctgtcaaatgttaacctactcaaggaatcttgcaagtccacctgagaacctgcttcaga |
13011085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 13010797 - 13010840
Alignment:
| Q |
114 |
ggaaaatgttatactttcatacaagaatcggtcaagatattctt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13010797 |
ggaaaatgttatactttcatacaagaatcggtcaagattttctt |
13010840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 13086701 - 13086779
Alignment:
| Q |
134 |
acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca |
212 |
Q |
| |
|
|||||||| ||| ||||| |||||| || |||||| |||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
13086701 |
acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca |
13086779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 13064837 - 13064701
Alignment:
| Q |
129 |
ttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccataaactacttggaatg |
228 |
Q |
| |
|
||||| ||||||| ||||||| |||||| || || |||| |||||||||||||||| | ||||||||| |||| |||||||| | | |||||| | |
|
|
| T |
13064837 |
ttcatgcaagaatttgtcaagactttcttgagctactttgagtttcttctcttgaccaatttggagccatttctgcagcttccatacaaaagttggaaag |
13064738 |
T |
|
| Q |
229 |
aagtgcctgtagaatatcacttcctccatcacagaaa |
265 |
Q |
| |
|
||| |||||||| ||| ||||||| |||| ||||| |
|
|
| T |
13064737 |
aagcccctgtagactattgcttcctcaatcatagaaa |
13064701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 31396310 - 31396165
Alignment:
| Q |
116 |
aaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttccataa |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||| |||| | || |||| |||||||||| | | |||| |||| ||||||||| |
|
|
| T |
31396310 |
aaaatgttatactgtcatacaagaatcggttaagattttcttgggctacctcgtacctcttttcttgaccaagaagaaattatttctgcagcttccataa |
31396211 |
T |
|
| Q |
216 |
actacttggaatgaagtgcctgtagaatatcacttcctccatcaca |
261 |
Q |
| |
|
|| ||| |||||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
31396210 |
acaactaggaatgaagttcctatagaatatcacttcctctatcaca |
31396165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 386
Target Start/End: Original strand, 31376166 - 31376330
Alignment:
| Q |
223 |
ggaatgaagtgcctgtagaatatcacttcctccatcacagaaaaagattctttatacggaatttttctatgctgattaaacttgtttggaaggcaatttg |
322 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||| || ||||| || ||| | ||||| |||| | | | ||| ||| |||||||| ||||| | |
|
|
| T |
31376166 |
ggaatgaagtttatgtagaataacacttcctctatcacaataagagatttttgatatgaaatttctctaagatcactaatcttatttggaagccaattag |
31376265 |
T |
|
| Q |
323 |
gatcaaatccaaataaaat-catgcagctgctatcaaaggtgaacctattaaaggcatcttgcaa |
386 |
Q |
| |
|
||||||||||||||| ||| |||||| |||| ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
31376266 |
gatcaaatccaaatacaataaatgcagatgctgtcaaaagtgaacctattcaagatatcttgcaa |
31376330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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