View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_high_11 (Length: 422)

Name: NF1926_high_11
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_high_11
NF1926_high_11
[»] chr4 (23 HSPs)
chr4 (1-404)||(32724673-32725076)
chr4 (71-146)||(4441396-4441468)
chr4 (91-149)||(26250997-26251052)
chr4 (91-153)||(42775617-42775676)
chr4 (74-151)||(46724195-46724269)
chr4 (116-155)||(56339143-56339182)
chr4 (116-146)||(4441338-4441368)
chr4 (116-150)||(14982277-14982311)
chr4 (71-147)||(14982348-14982420)
chr4 (342-376)||(32724661-32724695)
chr4 (71-116)||(857307-857352)
chr4 (116-153)||(4896642-4896679)
chr4 (71-116)||(26250955-26251000)
chr4 (71-116)||(28845939-28845984)
chr4 (116-149)||(31473847-31473880)
chr4 (116-149)||(36455905-36455938)
chr4 (116-145)||(42542995-42543024)
chr4 (116-149)||(49111440-49111473)
chr4 (71-111)||(1107103-1107143)
chr4 (115-147)||(1112605-1112637)
chr4 (71-111)||(11041018-11041058)
chr4 (71-103)||(36455975-36456007)
chr4 (71-111)||(41498558-41498598)
[»] chr2 (13 HSPs)
chr2 (71-147)||(11684658-11684731)
chr2 (71-152)||(10244245-10244323)
chr2 (71-116)||(11716454-11716499)
chr2 (71-116)||(14537245-14537290)
chr2 (115-152)||(35047720-35047757)
chr2 (74-151)||(3345816-3345891)
chr2 (71-141)||(11824704-11824771)
chr2 (116-152)||(14537309-14537345)
chr2 (116-150)||(1583851-1583885)
chr2 (91-151)||(8736443-8736500)
chr2 (116-150)||(14365827-14365861)
chr2 (116-150)||(41461643-41461677)
chr2 (116-152)||(11824790-11824826)
[»] chr1 (23 HSPs)
chr1 (71-147)||(5474417-5474490)
chr1 (71-153)||(45565462-45565541)
chr1 (71-116)||(4038121-4038166)
chr1 (91-151)||(32572936-32572993)
chr1 (71-116)||(15034727-15034772)
chr1 (71-116)||(27935553-27935598)
chr1 (116-156)||(15034787-15034827)
chr1 (72-147)||(17502198-17502270)
chr1 (74-145)||(47074156-47074223)
chr1 (116-151)||(30190264-30190299)
chr1 (116-150)||(24273262-24273296)
chr1 (71-116)||(23536113-23536158)
chr1 (71-116)||(28745864-28745909)
chr1 (71-116)||(34756495-34756540)
chr1 (118-155)||(41823186-41823223)
chr1 (71-116)||(50005147-50005192)
chr1 (117-149)||(6470729-6470761)
chr1 (72-116)||(27804311-27804355)
chr1 (115-147)||(27804392-27804424)
chr1 (116-152)||(34756422-34756458)
chr1 (71-111)||(37214870-37214910)
chr1 (72-116)||(40264099-40264143)
chr1 (118-150)||(48953584-48953616)
[»] scaffold0044 (1 HSPs)
scaffold0044 (71-147)||(56287-56365)
[»] scaffold1562 (2 HSPs)
scaffold1562 (71-116)||(473-518)
scaffold1562 (116-155)||(533-572)
[»] scaffold1158 (2 HSPs)
scaffold1158 (71-116)||(2075-2120)
scaffold1158 (116-155)||(2021-2060)
[»] chr5 (19 HSPs)
chr5 (71-116)||(9764406-9764451)
chr5 (71-151)||(40643832-40643909)
chr5 (71-116)||(15374006-15374051)
chr5 (71-116)||(20523179-20523224)
chr5 (91-150)||(33146188-33146244)
chr5 (71-111)||(2316447-2316487)
chr5 (91-152)||(2550323-2550381)
chr5 (116-151)||(22303909-22303944)
chr5 (91-147)||(15270853-15270906)
chr5 (91-147)||(22305112-22305165)
chr5 (116-150)||(33146058-33146092)
chr5 (116-150)||(34982317-34982351)
chr5 (116-149)||(22766950-22766983)
chr5 (71-116)||(32390040-32390085)
chr5 (116-152)||(15804317-15804353)
chr5 (116-152)||(22302534-22302570)
chr5 (117-149)||(34105087-34105119)
chr5 (116-152)||(37722933-37722969)
chr5 (115-147)||(40090452-40090484)
[»] chr3 (19 HSPs)
chr3 (71-116)||(28092260-28092305)
chr3 (72-150)||(25655312-25655387)
chr3 (71-151)||(44436326-44436408)
chr3 (71-149)||(331991-332066)
chr3 (71-116)||(44692890-44692935)
chr3 (72-116)||(9129413-9129457)
chr3 (72-116)||(9137520-9137564)
chr3 (72-116)||(27251963-27252007)
chr3 (116-151)||(44692818-44692853)
chr3 (116-151)||(47767428-47767463)
chr3 (116-150)||(36398030-36398064)
chr3 (116-150)||(46429411-46429445)
chr3 (71-116)||(5415829-5415874)
chr3 (71-116)||(31070474-31070519)
chr3 (116-149)||(46672844-46672877)
chr3 (71-111)||(39110445-39110485)
chr3 (116-152)||(42005994-42006030)
chr3 (116-152)||(44692950-44692986)
chr3 (71-111)||(46429464-46429504)
[»] chr8 (17 HSPs)
chr8 (91-152)||(29611383-29611441)
chr8 (71-147)||(14799979-14800051)
chr8 (91-150)||(34008796-34008852)
chr8 (116-150)||(3853613-3853647)
chr8 (71-117)||(3853684-3853730)
chr8 (116-150)||(3858071-3858105)
chr8 (71-117)||(3858142-3858188)
chr8 (116-150)||(7202938-7202972)
chr8 (116-150)||(28324714-28324748)
chr8 (116-150)||(29257403-29257437)
chr8 (91-147)||(30444945-30444998)
chr8 (72-152)||(38573409-38573485)
chr8 (95-151)||(42711300-42711353)
chr8 (71-116)||(17110915-17110960)
chr8 (116-149)||(33902665-33902698)
chr8 (116-149)||(44889352-44889385)
chr8 (116-152)||(17110997-17111033)
[»] chr7 (18 HSPs)
chr7 (71-116)||(2057441-2057486)
chr7 (71-116)||(5644745-5644790)
chr7 (71-116)||(34388333-34388378)
chr7 (116-152)||(40853982-40854018)
chr7 (71-111)||(44915246-44915286)
chr7 (116-151)||(34398977-34399012)
chr7 (116-150)||(6498793-6498827)
chr7 (91-147)||(19865542-19865595)
chr7 (116-150)||(28539196-28539230)
chr7 (116-149)||(23548639-23548672)
chr7 (116-149)||(26162165-26162198)
chr7 (71-116)||(29065887-29065932)
chr7 (116-149)||(31913309-31913342)
chr7 (91-150)||(32650588-32650644)
chr7 (116-149)||(35455802-35455835)
chr7 (115-147)||(30080810-30080842)
chr7 (71-111)||(40854037-40854077)
chr7 (71-111)||(49052836-49052876)
[»] chr6 (8 HSPs)
chr6 (71-116)||(6919754-6919799)
chr6 (72-147)||(9285716-9285788)
chr6 (116-152)||(34245022-34245058)
chr6 (116-151)||(9285643-9285678)
chr6 (118-152)||(29889478-29889512)
chr6 (117-150)||(1368474-1368507)
chr6 (116-149)||(33733430-33733463)
chr6 (116-152)||(6919835-6919871)
[»] scaffold0240 (1 HSPs)
scaffold0240 (116-150)||(17609-17643)
[»] scaffold0039 (1 HSPs)
scaffold0039 (116-149)||(109047-109080)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 32725076 - 32724673
Alignment:
Q  1 tgtaagaatattatttgaaacacaattaacaacttagacgtaaccctaaaataggagttagaccctaagagtgaattctattgtttgaactcacctcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  32725076 tgtaagaatattatttgaaacacaattaacaacttagacgtaaccctaaaataggagttagaccctaaaagtaaattctattgtttgaactcacctcaaa 32724977  T
Q  101 gtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagggattcgggccttacaaaccgagagaggtatttttagattttttgagggg 200  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  32724976 gtaattgaattccctcctcaaaacattcccccattcaaacacactctaaggggttcgggccttacaaaccgagggaggtatttctagattttttgagggg 32724877  T
Q  201 catgtgagcaattgaagggcctattgatcaaacttcaattagttattcatgtggacccttctattgggcttggtgatgataagtgttggtcattgatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32724876 catgtgagcaattgaagggcctattgatcaaacttcaattagttattcacgtggacccttctattgggcttggtgatgataagtgttggtcattgatgga 32724777  T
Q  301 tcttgaatcttaatctatgttaaaaatatacaagtagtggttagtacaaatcagttttgtttcttaattggaacttagtggtagtacaaatcatttttgt 400  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32724776 tcttgaatcttaatctattctaaaaatatacaagtagtggttagtacaaatcagttttgtttcttaattggaacttagtggtagtacaaatcatttttgt 32724677  T
Q  401 ttct 404  Q
    ||||    
T  32724676 ttct 32724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 4441396 - 4441468
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactc 146  Q
    ||||||||||||||||||| ||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||    
T  4441396 gtgaattctattgtttgaattcacctcaaagtagttgaatt---tcctcaaaacattcccccatccaaacacactc 4441468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 26250997 - 26251052
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaa 149  Q
    ||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||||    
T  26250997 tcacctcaaagtagttgaattccctc---aaaacattcccccatccaaacacactctaa 26251052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 42775676 - 42775617
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggga 153  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||||||||||||| |||||||    
T  42775676 tcacctcaaagtatttgaattccctc---aaaacattcccccatccaaacacactttaaggga 42775617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 46724195 - 46724269
Alignment:
Q  74 aattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||||||||||  ||||||||| ||||||||||    |||||||| ||| | ||||||||||||||| |||||    
T  46724195 aattctattgtttgaatccacctcaaaataattgaatt---ccctcaaaatatttccccatccaaacacactataagg 46724269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 56339182 - 56339143
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagggatt 155  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  56339182 cctcaaaacattccatcatccaaacacactctaaaggatt 56339143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 4441368 - 4441338
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactc 146  Q
    |||||||||||||||||||||||||||||||    
T  4441368 cctcaaaacattccaccatccaaacacactc 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 14982311 - 14982277
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  14982311 cctcaaaacattcctccatccaaacacactctaag 14982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 14982348 - 14982420
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||| |||| |||||| ||||||||||||| ||||||| ||||   |||| ||||| |||||||||||||||||    
T  14982348 gtgaattttatt-tttgaattcacctcaaagtagttgaattccctc---aaaagattcccccatccaaacacactct 14982420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 32724695 - 32724661
Alignment:
Q  342 tagtacaaatcagttttgtttcttaattggaactt 376  Q
    |||||||||||| ||||||||||||||||||||||    
T  32724695 tagtacaaatcatttttgtttcttaattggaactt 32724661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 857307 - 857352
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| ||||    
T  857307 gtgaattctattgtttgaattcaactcaaagtagttgaattccctc 857352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 4896679 - 4896642
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggga 153  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  4896679 cctcaaaatattcccccatccaaacacactctaaggga 4896642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 26251000 - 26250955
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||    
T  26251000 gtgaattctattatttgaatccacctcaaaataattgaatttcctc 26250955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 28845939 - 28845984
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| ||||    
T  28845939 gtgaattctattgtttgaattcaactcaaagtagttgaattccctc 28845984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 31473880 - 31473847
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  31473880 cctcaaaacattcccccatccaaacacactctaa 31473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 36455938 - 36455905
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  36455938 cctcaaaacattcccccatccaaacacactctaa 36455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 42542995 - 42543024
Alignment:
Q  116 cctcaaaacattccaccatccaaacacact 145  Q
    ||||||||||||||||||||||||||||||    
T  42542995 cctcaaaacattccaccatccaaacacact 42543024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 49111440 - 49111473
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  49111440 cctcaaaacattcccccatccaaacacactctaa 49111473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 1107143 - 1107103
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  1107143 gtgaattctattgtttgaattcatctcaaagtagttgaatt 1107103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 1112637 - 1112605
Alignment:
Q  115 tcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||| |||||||||||||||||    
T  1112637 tcctcaaaacattcccccatccaaacacactct 1112605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 11041058 - 11041018
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||| | ||||||||||||| |||||||    
T  11041058 gtgaattctattgtttggattcacctcaaagtagttgaatt 11041018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 36455975 - 36456007
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagta 103  Q
    ||||||||||||||||||| |||||||||||||    
T  36455975 gtgaattctattgtttgaattcacctcaaagta 36456007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 41498558 - 41498598
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    |||||||||||||||| || |||||||||| ||||||||||    
T  41498558 gtgaattctattgtttaaattcacctcaaaataattgaatt 41498598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 11684658 - 11684731
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||||||| ||||||||||||| |||||||    |||||||||||||| |||||||||||||||||    
T  11684658 gtgaattctattgtttgaattcacctcaaagtagttgaatt---ccctcaaaacattcctccatccaaacacactct 11684731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 10244245 - 10244323
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggg 152  Q
    ||||||| ||||||||||||||||||||||||| |||||||    ||| |||||||||| |||| |||| ||||||| ||||    
T  10244245 gtgaattttattgtttgaactcacctcaaagtagttgaatt---cccttaaaacattcccccattcaaatacactcttaggg 10244323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 11716499 - 11716454
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  11716499 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 11716454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 14537290 - 14537245
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  14537290 gtgaattctattgtttgaattcacctcaaagtagttgaattacctc 14537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 35047720 - 35047757
Alignment:
Q  115 tcctcaaaacattccaccatccaaacacactctaaggg 152  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  35047720 tcctcaaaacattcccccatccaaacacactctaaggg 35047757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 3345816 - 3345891
Alignment:
Q  74 aattctattgtttgaactcacctcaaagta-attgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||||| |||||||||||||  |||||||    |||||||||||| | |||||||||||| ||||||||    
T  3345816 aattctattgtttgaattcacctcaaagtacgttgaatt---ccctcaaaacatttccccatccaaacacgctctaagg 3345891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 11824771 - 11824704
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaaca 141  Q
    ||||||| ||||||||||| ||| ||||||||| |||||||    |||||||||||||| |||||||||||    
T  11824771 gtgaattatattgtttgaattcatctcaaagtagttgaatt---ccctcaaaacattcctccatccaaaca 11824704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 14537309 - 14537345
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14537309 cctcaaaacattcccccatccaaacacactctaaggg 14537345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 1583851 - 1583885
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  1583851 cctcaaaacattcccccatccaaacacactctaag 1583885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 8736443 - 8736500
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||||||| ||||||| ||||   ||||||||||  ||||||||||||||||||||    
T  8736443 tcacctcaaagtatttgaattccctc---aaaacattccctcatccaaacacactctaagg 8736500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 14365827 - 14365861
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  14365827 cctcaaaacattcctccatccaaacacactctaag 14365861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 41461643 - 41461677
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  41461643 cctcaaaacattcccccatccaaacacactctaag 41461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 11824790 - 11824826
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  11824790 cctcaaaacattcccccatccaaacacactttaaggg 11824826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 5474490 - 5474417
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||||||| |||| ||||||||||| ||||    |||||||||||||| |||||||||||||||||    
T  5474490 gtgaattctattgtttgaattcacttcaaagtaattaaatt---ccctcaaaacattcccccatccaaacacactct 5474417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 45565462 - 45565541
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggga 153  Q
    |||||||||||||||| || ||||||||||||| |||||||    |||||||||||||  ||||||||||||||||| |||||    
T  45565462 gtgaattctattgtttaaattcacctcaaagtagttgaatt---ccctcaaaacattcttccatccaaacacactcttaggga 45565541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 4038166 - 4038121
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  4038166 gtgaattctattgtttgaactcacctcaaagtagttgaattccctc 4038121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 32572993 - 32572936
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||||||    
T  32572993 tcacctcaaagtagttgaattccctc---aaaacattcccccatccaaacacactctaagg 32572936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 15034727 - 15034772
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  15034727 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 15034772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 27935553 - 27935598
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  27935553 gtgaattctattgtttgaattcaactcaaagtagttgaatttcctc 27935598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 15034787 - 15034827
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagggattc 156  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  15034787 cctcaaaacattcccccatccaaacacactctaaggtattc 15034827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 17502270 - 17502198
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||| |||||| ||||||||||||| |||||||  || ||||||| |||||  ||||||||||||||||    
T  17502270 tgaattctattatttgaattcacctcaaagtagttgaatt--ct-ctcaaaatattccctcatccaaacacactct 17502198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 47074223 - 47074156
Alignment:
Q  74 aattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacact 145  Q
    |||||||||||||||| ||||||||||||| ||||| |||||  |||||| ||||| |||||||||||||||    
T  47074223 aattctattgtttgaattcacctcaaagtagttgaa-ttcct--tcaaaatattcc-ccatccaaacacact 47074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 30190264 - 30190299
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  30190264 cctcaaaacattcccccatccaaacacactctaagg 30190299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 24273262 - 24273296
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  24273262 cctcaaaacattcccccatccaaacacactctaag 24273296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 23536158 - 23536113
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| ||||    
T  23536158 gtgaattatattgtttgaattcacctcaaagtagttgaattccctc 23536113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 28745864 - 28745909
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| |||||||||| || ||||||| ||||    
T  28745864 gtgaattctattgtttgaattcacctcaaaatagttgaattccctc 28745909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 34756495 - 34756540
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||||    
T  34756495 gtgaattctattgtttgaatccacctcaaaataattgaattccctc 34756540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 41823186 - 41823223
Alignment:
Q  118 tcaaaacattccaccatccaaacacactctaagggatt 155  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  41823186 tcaaaacattcccccatccaaacacactcttagggatt 41823223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 50005147 - 50005192
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||||    
T  50005147 gtgaattctattgtttgaatccacctcaaaataattgaattccctc 50005192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 6470729 - 6470761
Alignment:
Q  117 ctcaaaacattccaccatccaaacacactctaa 149  Q
    ||||||||||||| |||||||||||||||||||    
T  6470729 ctcaaaacattccgccatccaaacacactctaa 6470761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 27804355 - 27804311
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||| |||||||||| || ||||||| ||||    
T  27804355 tgaattctattgtttgaattcacctcaaaatagttgaattccctc 27804311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 27804392 - 27804424
Alignment:
Q  115 tcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||| |||||||||||||||||    
T  27804392 tcctcaaaacattcctccatccaaacacactct 27804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 34756458 - 34756422
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| |||||||||||| |||||||||    
T  34756458 cctcaaaacattcccccatccaaacactctctaaggg 34756422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 37214910 - 37214870
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  37214910 gtgaattctattgtttgaatccacctcaaaataattgaatt 37214870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 40264099 - 40264143
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||  ||||||||| |||||||||| ||||    
T  40264099 tgaattctattgtttgaatccacctcaaaataattgaattccctc 40264143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 48953616 - 48953584
Alignment:
Q  118 tcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||| ||||||||||||||||||||    
T  48953616 tcaaaacattcccccatccaaacacactctaag 48953584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 56365 - 56287
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc--ctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    ||  ||||||| |||||||||||||||||    
T  56365 gtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattcccccatccaaacacactct 56287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 473 - 518
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  473 gtgaattctattgtttgaactcacctcaaagtagttgaattccctc 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 533 - 572
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagggatt 155  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  533 cctcaaaacattcccccatccaaacacactataagggatt 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 2120 - 2075
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  2120 gtgaattctattgtttgaactcacctcaaagtagttgaattccctc 2075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 2060 - 2021
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagggatt 155  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  2060 cctcaaaacattcccccatccaaacacactataagggatt 2021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 9764406 - 9764451
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  9764406 gtgaattctattgtttgaactcacctcaaagtagttgaattccctc 9764451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 40643909 - 40643832
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||||||||||||| | | ||||||||| |||||||    |||||||||||| | ||||||||||||||| |||||    
T  40643909 gtgaattctattgtttgaatttaactcaaagtagttgaatt---ccctcaaaacatttctccatccaaacacactataagg 40643832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 15374051 - 15374006
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  15374051 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 15374006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 20523224 - 20523179
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  20523224 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 20523179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 33146244 - 33146188
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaag 150  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||||||||||||||||||    
T  33146244 tcacctcaaagtatttgaattccctc---aaaacattcccccatccaaacacactctaag 33146188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 2316447 - 2316487
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  2316447 gtgaattctattgtttgaattcacctcaaagtagttgaatt 2316487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 2550381 - 2550323
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggg 152  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||||||||||||||| ||||    
T  2550381 tcacctcaaagtagttgaattccctc---aaaacattcccccatccaaacacactcttaggg 2550323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 22303909 - 22303944
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  22303909 cctcaaaacattcccccatccaaacacactctaagg 22303944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 15270853 - 15270906
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||    
T  15270853 tcacctcaaagtatttgaattccctc---aaaacattcctccatccaaacacactct 15270906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 22305165 - 22305112
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||    
T  22305165 tcacctcaaagtagttgaattccctc---aaaacattcccccatccaaacacactct 22305112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 33146092 - 33146058
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  33146092 cctcaaaacattcccccatccaaacacactctaag 33146058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 34982317 - 34982351
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  34982317 cctcaaaacattcctccatccaaacacactctaag 34982351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 22766983 - 22766950
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  22766983 cctcaaaacattcccccatccaaacacactctaa 22766950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 32390040 - 32390085
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||| |||||| ||||||||||||| ||||||| ||||    
T  32390040 gtgaattctattatttgaattcacctcaaagtagttgaattccctc 32390085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 15804353 - 15804317
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15804353 cctcaaaacattcccccatccaaacacactctcaggg 15804317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 22302570 - 22302534
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||| | ||||||||||||||||||||||    
T  22302570 cctcaaaacattaccccatccaaacacactctaaggg 22302534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 34105119 - 34105087
Alignment:
Q  117 ctcaaaacattccaccatccaaacacactctaa 149  Q
    ||||||||||||| |||||||||||||||||||    
T  34105119 ctcaaaacattcctccatccaaacacactctaa 34105087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 37722933 - 37722969
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  37722933 cctcaaaatattcccccatccaaacacactctaaggg 37722969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 40090452 - 40090484
Alignment:
Q  115 tcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||| |||||||||||||||||    
T  40090452 tcctcaaaacattcccccatccaaacacactct 40090484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 28092305 - 28092260
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  28092305 gtgaattctattgtttgaattcacctcaaagtaattgaattccctc 28092260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 25655387 - 25655312
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaag 150  Q
    ||||||||||| |||||| ||| ||||||||| ||||||| ||||   |||||||| | ||||||||||||||||||||    
T  25655387 tgaattctattatttgaattcaactcaaagtagttgaattccctc---aaaacatttccccatccaaacacactctaag 25655312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 44436326 - 44436408
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc--ctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    ||  ||||| | |||||||||||||||||||||    
T  44436326 gtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacatttccccatccaaacacactctaagg 44436408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 332066 - 331991
Alignment:
Q  71 gtgaattctattgttt-gaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    |||||||||||| | |||||||||||||||||||    
T  332066 gtgaattctattgttttgaattcacctcaaagtagttgaatt---ccctcaaaacatt-ctccatccaaacacactctaa 331991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 44692890 - 44692935
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  44692890 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 44692935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 9129413 - 9129457
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  9129413 tgaattctattgtttgaattcacctcaaagtagttgaattccctc 9129457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 9137520 - 9137564
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  9137520 tgaattctattgtttgaattcacctcaaagtagttgaattccctc 9137564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 27251963 - 27252007
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  27251963 tgaattctattgtttgaattcacctcaaagtagttgaattccctc 27252007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 44692853 - 44692818
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  44692853 cctcaaaacattcccccatccaaacacactctaagg 44692818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 47767463 - 47767428
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  47767463 cctcaaaacattcccccatccaaacacactctaagg 47767428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 36398030 - 36398064
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  36398030 cctcaaaacattcccccatccaaacacactctaag 36398064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 46429445 - 46429411
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  46429445 cctcaaaacattcccccatccaaacacactctaag 46429411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 5415874 - 5415829
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||    
T  5415874 gtgaattctattgtttgtactcaccttaaagtagttgaattccctc 5415829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 31070474 - 31070519
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||||    
T  31070474 gtgaattctattgtttgaatccacctcaaaataattgaattccctc 31070519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 46672844 - 46672877
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  46672844 cctcaaaacattcccccatccaaacacactctaa 46672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 39110485 - 39110445
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  39110485 gtgaattctattgtttgaattcaactcaaagtagttgaatt 39110445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 42005994 - 42006030
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  42005994 cctcaaaacattcccccatccaaacacactcttaggg 42006030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 44692950 - 44692986
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  44692950 cctcaaaacattcctccatccaaacacactcttaggg 44692986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 46429464 - 46429504
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  46429464 gtgaattctattgtttgaatccacctcaaaataattgaatt 46429504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 29611441 - 29611383
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggg 152  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||||||||||||||||||||    
T  29611441 tcacctcaaagtatttgaattccctc---aaaacattcccccatccaaacacactctaaggg 29611383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 14800051 - 14799979
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||| |||||||||||||||||||||| || || ||||    |||||||||||||| |||||||||||||||||    
T  14800051 gtgaattttattgtttgaactcacctcaaa-tagtttaatt---ccctcaaaacattcccccatccaaacacactct 14799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 34008852 - 34008796
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaag 150  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||||||||||||||||||    
T  34008852 tcacctcaaagtatttgaattccctc---aaaacattcccccatccaaacacactctaag 34008796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 3853647 - 3853613
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  3853647 cctcaaaacattcccccatccaaacacactctaag 3853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 3853684 - 3853730
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcc 117  Q
    |||||||||||||||||||  ||||||||| |||||||||| |||||    
T  3853684 gtgaattctattgtttgaatccacctcaaaataattgaattccctcc 3853730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 3858105 - 3858071
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  3858105 cctcaaaacattcccccatccaaacacactctaag 3858071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 3858142 - 3858188
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctcc 117  Q
    |||||||||||||||||||  ||||||||| |||||||||| |||||    
T  3858142 gtgaattctattgtttgaatccacctcaaaataattgaattccctcc 3858188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 7202938 - 7202972
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  7202938 cctcaaaacattcctccatccaaacacactctaag 7202972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28324714 - 28324748
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  28324714 cctcaaaacattcctccatccaaacacactctaag 28324748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 29257403 - 29257437
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  29257403 cctcaaaacattcccccatccaaacacactctaag 29257437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 30444945 - 30444998
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||    
T  30444945 tcacctcaaagtatttgaattccctc---aaaacattcctccatccaaacacactct 30444998  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 38573485 - 38573409
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||||||| ||| || |||||| ||||||||   |||||||||||| | ||||||||||| ||| ||||||    
T  38573485 tgaattctattgtttgaattcaactaaaagtagttgaattt---cctcaaaacatttc-ccatccaaacatactataaggg 38573409  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 42711353 - 42711300
Alignment:
Q  95 ctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaagg 151  Q
    ||||||||| ||||||||||||   |||||||| | |||||||||||||||||||||    
T  42711353 ctcaaagtagttgaatttcctc---aaaacatttccccatccaaacacactctaagg 42711300  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 17110960 - 17110915
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| ||||    
T  17110960 gtgaattctattgtttgaattcaactcaaagtagttgaattccctc 17110915  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 33902698 - 33902665
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  33902698 cctcaaaacattcctccatccaaacacactctaa 33902665  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 44889385 - 44889352
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  44889385 cctcaaaacattcctccatccaaacacactctaa 44889352  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17110997 - 17111033
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||| | ||||||||||||||||||||||    
T  17110997 cctcaaaacatttctccatccaaacacactctaaggg 17111033  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 2057486 - 2057441
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  2057486 gtgaattttattgtttgaactcacctcaaagtagttgaattccctc 2057441  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 5644745 - 5644790
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||||    
T  5644745 gtgaattctattgtttgaacccacctcaaaataattgaattccctc 5644790  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 34388333 - 34388378
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||    
T  34388333 gtgaattccattgtttgaactcacctcaaagtagttgaattccctc 34388378  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 40854018 - 40853982
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40854018 cctcaaaacattcccccatccaaacacactctaaggg 40853982  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 44915286 - 44915246
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  44915286 gtgaattctattgtttgaattcacctcaaagtagttgaatt 44915246  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 34398977 - 34399012
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  34398977 cctcaaaacattcccccatccaaacacactctaagg 34399012  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 6498793 - 6498827
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  6498793 cctcaaaacattcctccatccaaacacactctaag 6498827  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 19865542 - 19865595
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||| |||||||||||   |||||||||||  ||||||||||||||||    
T  19865542 tcacctcaaagtatttgaatttcct---caaaacattccctcatccaaacacactct 19865595  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 28539196 - 28539230
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  28539196 cctcaaaacattcccccatccaaacacactctaag 28539230  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 23548639 - 23548672
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  23548639 cctcaaaacattcctccatccaaacacactctaa 23548672  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 26162165 - 26162198
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  26162165 cctcaaaacattcccccatccaaacacactctaa 26162198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 29065887 - 29065932
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||||    
T  29065887 gtgaattctattgtttgaatccacctcaaaataattgaattccctc 29065932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 31913309 - 31913342
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  31913309 cctcaaaacattcccccatccaaacacactctaa 31913342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 32650644 - 32650588
Alignment:
Q  91 tcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactctaag 150  Q
    ||||||||||||| ||||||| ||||   |||||||||| ||||| ||||||||||||||    
T  32650644 tcacctcaaagtatttgaattccctc---aaaacattcctccatcgaaacacactctaag 32650588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 35455835 - 35455802
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  35455835 cctcaaaacattcccccatccaaacacactctaa 35455802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 30080810 - 30080842
Alignment:
Q  115 tcctcaaaacattccaccatccaaacacactct 147  Q
    ||||||||||||||| |||||||||||||||||    
T  30080810 tcctcaaaacattcccccatccaaacacactct 30080842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 40854037 - 40854077
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  40854037 gtgaattctattgtttgaattcaactcaaagtagttgaatt 40854077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 49052876 - 49052836
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatt 111  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  49052876 gtgaattctattgtttgaattcaactcaaagtagttgaatt 49052836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 6919799 - 6919754
Alignment:
Q  71 gtgaattctattgtttgaactcacctcaaagtaattgaatttcctc 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  6919799 gtgaattctattgtttgaattcacctcaaagtagttgaattccctc 6919754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 9285716 - 9285788
Alignment:
Q  72 tgaattctattgtttgaactcacctcaaagtaattgaatttcctcctcaaaacattccaccatccaaacacactct 147  Q
    |||||||||||||||||| ||| ||||||||| |||||||    ||||||||||||||  |||| |||||||||||    
T  9285716 tgaattctattgtttgaattcatctcaaagtagttgaatt---ccctcaaaacattccctcatctaaacacactct 9285788  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 34245022 - 34245058
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34245022 cctcaaaacattcctccatccaaacacactctaaggg 34245058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 9285678 - 9285643
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaagg 151  Q
    |||||||||||||| |||||||||||||||||||||    
T  9285678 cctcaaaacattcccccatccaaacacactctaagg 9285643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 29889478 - 29889512
Alignment:
Q  118 tcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  29889478 tcaaaacattcctccatccaaacacactctaaggg 29889512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 1368507 - 1368474
Alignment:
Q  117 ctcaaaacattccaccatccaaacacactctaag 150  Q
    ||||||||||||| ||||||||||||||||||||    
T  1368507 ctcaaaacattcctccatccaaacacactctaag 1368474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 33733463 - 33733430
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  33733463 cctcaaaacattcccccatccaaacacactctaa 33733430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6919835 - 6919871
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaaggg 152  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  6919835 cctcaaaacattcccccatccaaacacactcttaggg 6919871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 17609 - 17643
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaag 150  Q
    |||||||||||||| ||||||||||||||||||||    
T  17609 cctcaaaacattcccccatccaaacacactctaag 17643  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 109080 - 109047
Alignment:
Q  116 cctcaaaacattccaccatccaaacacactctaa 149  Q
    |||||||||||||| |||||||||||||||||||    
T  109080 cctcaaaacattcccccatccaaacacactctaa 109047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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