View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_high_12 (Length: 415)
Name: NF1926_high_12
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 39586856 - 39586461
Alignment:
| Q |
18 |
catgcaagccctagctcgtggttctagttctag------cgacggttttgcgagagtggagttgaaaacaaagctttcggagatgacttttaacacgata |
111 |
Q |
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| T |
39586856 |
catgcaagccctagctcgtggttctagttctagttctagcgacggttttgtgagagtggagttgaaaacaaagctttcggagatgacttttaacacgata |
39586757 |
T |
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| Q |
112 |
atgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtat |
211 |
Q |
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| T |
39586756 |
atgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtat |
39586657 |
T |
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| Q |
212 |
cgttgggtggttcgagtaatcctggtgaatttgttgggattttgaggtggttcgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatt |
311 |
Q |
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| T |
39586656 |
cgttgggtggttcgagtaatcctggtgaatttgttgggattttgaggtggtttgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatt |
39586557 |
T |
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| Q |
312 |
tgatgggtttttgcagggtttgattgatgagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaagaattatc |
407 |
Q |
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| T |
39586556 |
tgatgggtttttgcaaggtttgattgatgagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaagaattatc |
39586461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 38954399 - 38954439
Alignment:
| Q |
112 |
atgagaatgatatctggaaagagatattatggtgaggattg |
152 |
Q |
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| T |
38954399 |
atgagaatgatctctggaaagagatactatggtgatgattg |
38954439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 5884330 - 5884410
Alignment:
| Q |
86 |
tttcggagatgacttttaacacgataatgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatg |
166 |
Q |
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| T |
5884330 |
tttcggaaatgacatttaatactataatgagaatggtgtcggggaaaagatactatggaaatgattgtgatgtgagtgatg |
5884410 |
T |
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