View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_high_13 (Length: 386)
Name: NF1926_high_13
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 29580369 - 29580604
Alignment:
| Q |
1 |
aagaaataagcaagagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaatttttgatttcgtttaggctaatattaattgtt |
100 |
Q |
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| T |
29580369 |
aagaaataagcaagagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaattttttatttcgtttaggctaatattaattgtt |
29580468 |
T |
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| Q |
101 |
agcaaactggtggttatgttaattctcaggatttaaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagta |
200 |
Q |
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| T |
29580469 |
--------------------aattctcaggatttgaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagta |
29580548 |
T |
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| Q |
201 |
ggacctagatgcagaactcggttaacattttacatattttttgagacaatacaagt |
256 |
Q |
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| T |
29580549 |
ggacctagatgcagaactcggttaacattttacatattttttgagacaatacaagt |
29580604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 29580669 - 29580721
Alignment:
| Q |
321 |
ttcctacacttgattttaagctaaaggattcaaatggttgcaacctcctgcct |
373 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29580669 |
ttcctacatttgattttaagctaaaggattcaaatggttacaacctcctgcct |
29580721 |
T |
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