View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_high_15 (Length: 338)
Name: NF1926_high_15
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 43415274 - 43415587
Alignment:
| Q |
17 |
gatatgattgaatttagggcatggggagaagtaactggtagcttgattggaaaaagaagtagtggaggagatgatcaacatcatcataatcataatcaac |
116 |
Q |
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| T |
43415274 |
gatatgattgaatttagggcatggggagaagtaactggtagcttgattggaaaaagaagtagtggaggagatgatcaacatcatcatcatcataatcaac |
43415373 |
T |
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| Q |
117 |
aactaggggtttctgcaataaagatgaagaaaatgaagggaagaagaaaggtgagggagcctaggttttgcttcaagactatgagcgacgtggatgtgtt |
216 |
Q |
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| T |
43415374 |
aactaggggtttctgcaataaagatgaagaaaatgaagggaagaagaaaggtgagggagcctaggttttgcttcaagactatgagcgacgtggatgtgtt |
43415473 |
T |
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| Q |
217 |
ggatgatggttacaagtggaggaagtacggacagaaagtggtcaagaacacacagcatccaaggtattttctctctttttaattatttaatttgtttgtc |
316 |
Q |
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| T |
43415474 |
ggacgatggttacaagtggaggaagtacggacagaaagtggtcaagaacacacagcatccaaggtattttctctctttttaattatttaatttgtttgtc |
43415573 |
T |
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| Q |
317 |
tttatgctctctct |
330 |
Q |
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| T |
43415574 |
tttatgctctctct |
43415587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 283
Target Start/End: Complemental strand, 38496149 - 38496003
Alignment:
| Q |
140 |
atgaagaaaatgaagggaagaagaaaggtgagggagcctaggttttgcttcaagactatgagc---gacgtggatgtgttggatgatggttacaagtgga |
236 |
Q |
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| T |
38496149 |
atgaagaaaatgaagggaagaaagaaagtgagagagcctaggttttgcttcaaaacattgagtactgatgtggatgtgttggatgatggttacaagtgga |
38496050 |
T |
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| Q |
237 |
ggaagtacggacagaaagtggtcaagaacacacagcatccaaggtat |
283 |
Q |
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| T |
38496049 |
ggaagtatggacaaaaagttgtaaagaacacccaacatcccaggtat |
38496003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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