View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_high_20 (Length: 297)

Name: NF1926_high_20
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_high_20
NF1926_high_20
[»] chr3 (2 HSPs)
chr3 (18-297)||(38214023-38214302)
chr3 (18-297)||(38218242-38218521)
[»] chr8 (3 HSPs)
chr8 (106-297)||(42991291-42991482)
chr8 (106-297)||(35017979-35018170)
chr8 (201-242)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (154-283)||(37188902-37189031)
chr7 (211-272)||(32715057-32715118)
chr7 (211-272)||(32709835-32709896)
chr7 (211-272)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (211-275)||(10411404-10411468)
chr6 (211-275)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (153-269)||(53492975-53493091)
chr4 (154-269)||(53499268-53499383)
chr4 (170-243)||(53495378-53495451)
chr4 (175-261)||(53488672-53488758)
chr4 (172-242)||(53502408-53502478)
chr4 (154-269)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (175-266)||(16942656-16942747)
chr2 (175-266)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (201-242)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 38214302 - 38214023
Alignment:
Q  18 gtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38214302 gtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttg 38214203  T
Q  118 gttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214202 gttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatg 38214103  T
Q  218 ctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214102 ctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 38214023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 38218521 - 38218242
Alignment:
Q  18 gtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38218521 gtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttg 38218422  T
Q  118 gttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218421 gttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatg 38218322  T
Q  218 ctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218321 ctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 38218242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 42991291 - 42991482
Alignment:
Q  106 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 205  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  206 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 297  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttc 42991482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 35017979 - 35018170
Alignment:
Q  106 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 205  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  206 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 297  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttc 35018170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  201 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 242  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  154 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 253  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  254 ctgattggtccaaagcaccctttacagctt 283  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  211 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 272  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  211 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 272  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  211 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 272  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  211 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 275  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  211 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 275  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  153 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 252  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  253 actgattggtccaaagc 269  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  154 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 253  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  254 ctgattggtccaaagc 269  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  170 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 243  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  175 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 261  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  172 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 242  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  154 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 253  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  254 ctgattggtccaaagc 269  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  175 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 266  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  175 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 266  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  201 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 242  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University