View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_high_25 (Length: 246)

Name: NF1926_high_25
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_high_25
NF1926_high_25
[»] chr7 (5 HSPs)
chr7 (2-226)||(18132113-18132337)
chr7 (2-226)||(18143900-18144124)
chr7 (162-225)||(7704417-7704480)
chr7 (158-210)||(6214759-6214811)
chr7 (110-177)||(13807900-13807967)
[»] chr1 (4 HSPs)
chr1 (54-219)||(32730651-32730816)
chr1 (59-213)||(17405095-17405249)
chr1 (81-208)||(11648736-11648863)
chr1 (160-210)||(5413081-5413131)
[»] chr6 (2 HSPs)
chr6 (41-215)||(13698809-13698983)
chr6 (152-216)||(14392257-14392321)
[»] chr4 (2 HSPs)
chr4 (160-210)||(48104360-48104410)
chr4 (126-201)||(32152604-32152679)
[»] scaffold0394 (1 HSPs)
scaffold0394 (155-210)||(3455-3510)
[»] chr5 (1 HSPs)
chr5 (46-217)||(34940236-34940407)
[»] chr8 (1 HSPs)
chr8 (155-203)||(41091601-41091649)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 18132337 - 18132113
Alignment:
Q  2 taaggttatatggcttgcctttgtttgagttacttggaagaaacg-aataaccgtatttttaaaaatatagctttagacccttcaactctcatcgagaag 100  Q
    |||||||||||||||||||| ||||||  ||   |||||| | || ||||||  ||||||||||||||| | ||||||||  ||||||||||||||||||    
T  18132337 taaggttatatggcttgcctgtgtttggattttgtggaagtagcgtaataacaatatttttaaaaatatggttttagaccgatcaactctcatcgagaag 18132238  T
Q  101 gttaagctcaatttctttttgtggttgaaatcaaaacgggtggcgttcatatatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtcc 200  Q
    || ||| |||||| ||||||||||||||||||||||  ||||  ||| ||||||| ||| |||||||||||||||||   | ||||||||||||||||||    
T  18132237 gtcaaggtcaattcctttttgtggttgaaatcaaaataggtgatgtttatatatactttccatgaatggtggaaacaccct-ttttgtgtatgggtgtcc 18132139  T
Q  201 acttgtaattatttttgttttggttg 226  Q
    ||||| ||||||||||||||| ||||    
T  18132138 acttggaattatttttgtttttgttg 18132113  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 18144124 - 18143900
Alignment:
Q  2 taaggttatatggcttgcctttgtttgagttacttggaagaaacg-aataaccgtatttttaaaaatatagctttagacccttcaactctcatcgagaag 100  Q
    ||||||||||||| |||||| ||||||  ||   |||||| | || ||||||  ||||||||||||||| | ||||||||  ||||||||||||||||||    
T  18144124 taaggttatatggtttgcctgtgtttggattttgtggaagtagcgtaataacaatatttttaaaaatatggttttagaccgatcaactctcatcgagaag 18144025  T
Q  101 gttaagctcaatttctttttgtggttgaaatcaaaacgggtggcgttcatatatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtcc 200  Q
    || ||| |||||| ||||||||||||||||||||||  ||||  ||| ||||||| ||| |||||||||||||||||   | ||||||||| ||||||||    
T  18144024 gtcaaggtcaattcctttttgtggttgaaatcaaaataggtgatgtttatatatactttccatgaatggtggaaacaccct-ttttgtgtaagggtgtcc 18143926  T
Q  201 acttgtaattatttttgttttggttg 226  Q
    ||||| ||||||||||||||| ||||    
T  18143925 acttggaattatttttgtttttgttg 18143900  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 7704417 - 7704480
Alignment:
Q  162 atgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattatttttgttttggtt 225  Q
    ||||||||||||||||   ||| ||||||||||||||||||||||||| |||||||||||||||    
T  7704417 atgaatggtggaaacaccctctcttgtgtatgggtgtccacttgtaatcatttttgttttggtt 7704480  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 6214811 - 6214759
Alignment:
Q  158 tttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaatt 210  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  6214811 tttcatgattggtggaaacatcctcttttgtgtatgggtgtccacttgtaatt 6214759  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 13807967 - 13807900
Alignment:
Q  110 aatttctttttgtggttgaaatcaaaacgggtggcgttcatatatagttttcatgaatggtggaaaca 177  Q
    |||| |||||| ||||||||||||||||  |||||||||   ||||||| |||||| |||||||||||    
T  13807967 aattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaaca 13807900  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 32730651 - 32730816
Alignment:
Q  54 gtatttttaaaaatatagctttagacccttcaactctcatcgagaaggttaagctcaatttctttttgtggttgaaatcaaaacgggtggcgttcatata 153  Q
    |||| ||||||||||  ||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||| |||||||||||| |||| ||||||| ||    
T  32730651 gtatctttaaaaatacggctttagacccttcagctcgcattgagaaggttaagctcaattccttcttgtgggtgaaatcaaaacaggtgtcgttcattta 32730750  T
Q  154 tagttttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattatttttgtt 219  Q
     | |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  32730751 caatttttatgaatggtggaaacatcctcttttgtgtatgggtgtccacttgtaattattattgtt 32730816  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 17405095 - 17405249
Alignment:
Q  59 tttaaaaatatagctttagacccttcaactctcatcgagaaggttaagctcaatttctttttgtggttgaaatcaaaacgggtggcgttcatatatagtt 158  Q
    ||||||||||  |||| ||| || |||  |||||| || ||||||||||| ||||  || |||||| ||||||||||||  | | ||||||  |||||||    
T  17405095 tttaaaaatacggcttcagatccatcagttctcattgataaggttaagctaaattcattcttgtggatgaaatcaaaacatgcgtcgttcaattatagtt 17405194  T
Q  159 ttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattatt 213  Q
    ||||||| ||||||| ||||    ||||||| |||||||||||  ||||||||||    
T  17405195 ttcatgactggtggagacatccgtttttgtgcatgggtgtccatgtgtaattatt 17405249  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 11648863 - 11648736
Alignment:
Q  81 cttcaactctcatcgagaaggttaagctcaatttctttttgtggttgaaatcaaaacgggtggcgttcatatatagttttcatgaatggtggaaacattt 180  Q
    |||||||||| ||||| |||||||| ||| | |  ||||| |||||||||||||||  || | |||| |  || |||| |||||| | |||||||||  |    
T  11648863 cttcaactcttatcgaaaaggttaaactctactcttttttatggttgaaatcaaaataggcgacgtttaactacagttatcatgattagtggaaacacct 11648764  T
Q  181 tcttttgtgtatgggtgtccacttgtaa 208  Q
     ||| | |||||||||||||||||||||    
T  11648763 gcttctttgtatgggtgtccacttgtaa 11648736  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 5413131 - 5413081
Alignment:
Q  160 tcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaatt 210  Q
    |||||| |||||||||||| | ||||||||||||| ||| |||||||||||    
T  5413131 tcatgattggtggaaacatctgcttttgtgtatggatgtacacttgtaatt 5413081  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 13698983 - 13698809
Alignment:
Q  41 gaaacgaataaccgtatttttaaaaatatagctttagacccttcaactctcatcgagaaggttaagctcaatttctttttgtggttgaaatcaaaacggg 140  Q
    |||| ||||||  |||||||||||||||| |||| |||||| |||  |||||| || ||||| ||||| |||| ||| |||||| |||||||||||| ||    
T  13698983 gaaatgaataatagtatttttaaaaatatggcttcagacccgtcagttctcattgataaggtaaagcttaattccttcttgtggatgaaatcaaaacagg 13698884  T
Q  141 tggcgttcatatatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattatttt 215  Q
    || | ||||  || ||||||||||||||||||||||||   ||  ||||||||||||||||||||||||||||||    
T  13698883 tgtcattcagttacagttttcatgaatggtggaaacatccgctcgtgtgtatgggtgtccacttgtaattatttt 13698809  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 14392321 - 14392257
Alignment:
Q  152 tatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattattttt 216  Q
    ||||||| ||||||| |||||||||||| |||  | |||||| |||||||| ||||||| |||||    
T  14392321 tatagttatcatgaacggtggaaacattctctcctttgtatgagtgtccacgtgtaatttttttt 14392257  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 48104410 - 48104360
Alignment:
Q  160 tcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaatt 210  Q
    |||||| ||||||||||||   |||||||||||||||||||||||||||||    
T  48104410 tcatgattggtggaaacatccgcttttgtgtatgggtgtccacttgtaatt 48104360  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 32152679 - 32152604
Alignment:
Q  126 tgaaatcaaaacgggtggcgttcatatatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtcca 201  Q
    ||||||||||   |||||| ||||  || |||| |||||| |||||||||||| ||||||||||||||||| ||||    
T  32152679 tgaaatcaaagtaggtggcattcagttacagttatcatgactggtggaaacatcttcttttgtgtatgggtctcca 32152604  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 3455 - 3510
Alignment:
Q  155 agttttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaatt 210  Q
    |||| |||||| |||||||||||    |||||||||||||||||||||||||||||    
T  3455 agttatcatgattggtggaaacacccgcttttgtgtatgggtgtccacttgtaatt 3510  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 34940236 - 34940407
Alignment:
Q  46 gaataaccgtatttttaaaaatatagctttagacccttcaactctcatcgagaaggttaagctcaatttctttttgtggttgaaatcaaaacgggtggcg 145  Q
    |||||||| ||| ||||||| || ||||| ||| || ||   |||||| || ||||||||||| || |  || ||||||||||||||||||| |||| ||    
T  34940236 gaataaccatatctttaaaagtagagcttcagatccatctgttctcattgacaaggttaagctaaactctttcttgtggttgaaatcaaaacaggtgtcg 34940335  T
Q  146 ttcatatatagttttcatgaatggtggaaacattttcttttgtgtatgggtgtccacttgtaattatttttg 217  Q
    ||||  |  |||| | | || ||||| |||||||  ||| | ||| |||||||||||  |||||||||||||    
T  34940336 ttcaatttcagttattacgattggtgaaaacattcgcttctttgtttgggtgtccacgagtaattatttttg 34940407  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 41091601 - 41091649
Alignment:
Q  155 agttttcatgaatggtggaaacattttcttttgtgtatgggtgtccact 203  Q
    |||| |||||| |||||||||||| |||| | |||||||||||||||||    
T  41091601 agttatcatgagtggtggaaacatcttctctagtgtatgggtgtccact 41091649  T

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