View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_high_4 (Length: 611)
Name: NF1926_high_4
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 16807022 - 16807383
Alignment:
| Q |
1 |
gtgtggttgattagttgggttggctaaattatgtattttttcgtttggtggaattgacttttaatattatatacaaaatatacagattaattactctata |
100 |
Q |
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| T |
16807022 |
gtgtggttgattagttgggttggctaaattatgtattttttcgtttggtggaattgacttttaatattatatacaaaatatacagattaattactctata |
16807121 |
T |
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| Q |
101 |
aaatgtacannnnnnnaataagaaatcatatattattaaaagcaagccaatacaagaagtgcaagaccgacaattgttggaacactagtgcaaatgagtg |
200 |
Q |
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| T |
16807122 |
aaatgtacatttttttaataagaaatcatatattattaaaagcaagccaatacaagaagtgcaagaccgacaattgttggaacactagtgcaaatgagtg |
16807221 |
T |
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| Q |
201 |
gaagtttaaaagagtaaacataacatctcatatagactggaattagtgctgtgtgaattgnnnnnnntatctcttataggatagatcacatannnnnnnn |
300 |
Q |
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| T |
16807222 |
gaagtttaaaagagtaaacataacatctcacatagactgaaattagtgttgtgtgaattgaaaaaac-atctcttataggatagatcacata--tatttt |
16807318 |
T |
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| Q |
301 |
nnnngagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtctatatatatat |
365 |
Q |
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| T |
16807319 |
ttttgagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtatatatatatat |
16807383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 355 - 590
Target Start/End: Original strand, 16807415 - 16807654
Alignment:
| Q |
355 |
tatatatatatcacatgcatgacaacaacgctgtcgtctagctggacctaggccaaaaagnnnnnnnnnnn----agcagtgctattaagcacgacacaa |
450 |
Q |
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| T |
16807415 |
tatatatatatcacacgcatgacaacaacgccgtcgtctagctggacctgggccaaaaagtttttttttttttttagcagtgctattaagcatgacacaa |
16807514 |
T |
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| Q |
451 |
aaaatcaacgacaaacccacgacttctcaaattagtggatgaaaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaa-gg |
549 |
Q |
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| T |
16807515 |
aaac-caacgacaaacccacaacttctcaaattagtggatgacaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaaggg |
16807613 |
T |
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| Q |
550 |
ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgt |
590 |
Q |
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| T |
16807614 |
ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgt |
16807654 |
T |
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