View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1926_high_9 (Length: 437)
Name: NF1926_high_9
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 37796271 - 37796607
Alignment:
| Q |
6 |
aggagcacagatacatatcgtgaagatgaagggagtatgtaactcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgct |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37796271 |
aggaacacagatacatatcgtgaagatgaaggaagtatgtaactcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgct |
37796370 |
T |
|
| Q |
106 |
gctatgaatatcatgtgcaagctcgttataaatgatgggatgagtatgagggtggcgactgcttaccgcctcatttgtgcatcagctttcactattccag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37796371 |
gctatgaatatcatgtgcaagctcgttataaatgatgggatgagtatgagggttgcgactgcttaccgcctcatttgtgcatcagctttcactattccag |
37796470 |
T |
|
| Q |
206 |
ttgcccttttctttgacaggtaatcatcctcttactgaaaatgtcaaatccaatttagataattgaaagtggggtatcgatatatacacggtcatgagtg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
37796471 |
ttgcccttttctttgacaggtaatcatcctcttactgaaaatgtcaaatccaatttagataattaaaagtggggtatcgatatatgcaatgtcatgagtg |
37796570 |
T |
|
| Q |
306 |
ctataagtacacaatcatgaaattgtgcagaaatatg |
342 |
Q |
| |
|
||||||||||| ||| |||||||||| | ||||||| |
|
|
| T |
37796571 |
atataagtacactatcctgaaattgtgtaaaaatatg |
37796607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 37806331 - 37806508
Alignment:
| Q |
26 |
tgaagatgaagggagtatgtaactcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgctgctatgaatatcatgtgcaa |
125 |
Q |
| |
|
|||||||||| || |||| || |||||||||| |||||||||| |||| | ||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
37806331 |
tgaagatgaaaggggtatacaattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaa |
37806430 |
T |
|
| Q |
126 |
gctcgttataaatgatgggatgagtatgagggtggcgactgcttaccgcctcatttgtgcatcagctttcactattcc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
37806431 |
gctcgttataaatgatgggatgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcc |
37806508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 37785648 - 37785852
Alignment:
| Q |
25 |
gtgaagatgaagggagtatgtaactcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgctgctatgaatatcatgtgca |
124 |
Q |
| |
|
|||||||||||||| || |||| |||||| ||||| |||||||||| || | ||| ||||||||||||||||| ||| ||| |||||||||| |||| |
|
|
| T |
37785648 |
gtgaagatgaaggggataggtaattcattggaaggagtaaaaccagtgatcctaatgttgtttgtgcagattgcaggtgcagctgtgaatatcatatgca |
37785747 |
T |
|
| Q |
125 |
agctcgttataaatgatgggatgagtatgagggtggcgactgcttaccgcctcatttgtgcatcagctttcactattccagttgcccttttctttgacag |
224 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||||||| ||||| |||| ||| ||||||| || |
|
|
| T |
37785748 |
agcttgccataaatgatgggatgagcatgagggtggccactgcttaccgtctcacttttgcatcagctttcaccattcctcttgctcttatctttgatag |
37785847 |
T |
|
| Q |
225 |
gtaat |
229 |
Q |
| |
|
||||| |
|
|
| T |
37785848 |
gtaat |
37785852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 37778548 - 37778702
Alignment:
| Q |
49 |
tcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgctgctatgaatatcatgtgcaagctcgttataaatgatgggatga |
148 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| || |||||||||| ||||||| |||||||||||| ||||||||| ||||| ||||| |||| |
|
|
| T |
37778548 |
tcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatcatgtacaagctcgtcataaacgatggaatga |
37778647 |
T |
|
| Q |
149 |
gtatgagggtggcgactgcttaccgcctcatttgtgcatcagctttcactattcc |
203 |
Q |
| |
|
| ||||||||||| || ||||||||||||| || |||| | ||||||||| |||| |
|
|
| T |
37778648 |
gcatgagggtggccaccgcttaccgcctcagttttgcagcggctttcactgttcc |
37778702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University