View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_1 (Length: 955)
Name: NF1926_low_1
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 705
Target Start/End: Complemental strand, 33354178 - 33353491
Alignment:
| Q |
18 |
attaattgcagctttatgcaagcactacaatcatattactactgcaaattgtatactatgatcacatcctcagatggtgcaaacgtcgtcagaatgttaa |
117 |
Q |
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| T |
33354178 |
attaattgcagctttatgcaagcactacaatcatattactactgcaaattgtatactatgatcacatcctcagatggtgcaaacatcgtcagaatgttaa |
33354079 |
T |
|
| Q |
118 |
gagtaaattggtacatttctaatttcattgattcctcgtaaatttcatacttgaaacatgtgaagcacatatactcctcactttatgcgtgtcttagtgt |
217 |
Q |
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||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
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| T |
33354078 |
gagtaaattggtacatttctaatttcattaattcttcataaatttcatacttgaaacatgtgaagcacatatactccttaaattatgcgtgtcttactgt |
33353979 |
T |
|
| Q |
218 |
caagtatgtatcgtgtctaacatttgacacgacattgacacggatgattacatataatatacatcataacattttcttaaattattattaatatcgacgt |
317 |
Q |
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| T |
33353978 |
caagtatgtatcgtgtctgacatttgacacgacattgacacggatgattacatataatatatatcataacattttcttaaattattattaatatcgacgt |
33353879 |
T |
|
| Q |
318 |
attcgtgtcgtgtttggtgtctgtctctgaatgtatgtttca--------aactaaatatcaagtttttccataaacatttaactaataatacactctta |
409 |
Q |
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|| ||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33353878 |
atccgtgtcgtgtttggtgt-----tctgaatatatgtttcatagcttgaaactaaatatt---tttttccataaacatttaactaataatacactctta |
33353787 |
T |
|
| Q |
410 |
cgtactcttgttagttacttctacaattgtattatcttacaggataatgaagaagagaaaagacccttgaatccaaaaccaagtcaagagtactctggga |
509 |
Q |
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| T |
33353786 |
cgtactcttgttagttacttctacaattgtattatcttacaggataatgaagaagagaaaagacccttgaatccaaaaccaagtcaagtgtactctggga |
33353687 |
T |
|
| Q |
510 |
ttgcaataccaaatggcacacaaaaagaagcagctcgaggggagtactactacatgtacgaacctatattccacaaaattagatattgccatgccatatc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33353686 |
ttgcaataccaaatggcacacaaaaagaagcagctcgaggggagtactactacatgtacgaacctatattccacaaaattagatattgccatgccatatc |
33353587 |
T |
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| Q |
610 |
acactcaatgtgttactctcaattatgaaaaatatttcattagtcacaaatatttagacattttatttggacacattcacatacttgagtaaagtt |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33353586 |
acactcaatgtgttactctcaattatgaaaaatatttcattagtcacaaatatttagacattttatttcgacacattcacatacttgagtaaagtt |
33353491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 756 - 945
Target Start/End: Complemental strand, 33353440 - 33353251
Alignment:
| Q |
756 |
tatgtatttttgccctaaatcgtgtttaaatgtttgtgatcatacaagacttccttctcaatttttaaataatgcaggtcagcgagatcgctagcgggga |
855 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
33353440 |
tatgtatttttgccctaaatcgtgtttaaatgtttgtgatcatacaagacttccttctcaatttttaaataatgcaggtcagcaagatcgttagcgggga |
33353341 |
T |
|
| Q |
856 |
gtgcaactccaccctcgtttacccatctaagagctgctaaaagtggtccttcagctttggaattcatccatgattcttctgatgatgatg |
945 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
33353340 |
gtgcaactccaccctcgtttacccatctaagagctgctaaaagtggtccttcagccttggaattcatccacgattcttctgatgatgatg |
33353251 |
T |
|
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