View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_11 (Length: 431)
Name: NF1926_low_11
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_11 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 195 - 431
Target Start/End: Complemental strand, 45039939 - 45039703
Alignment:
| Q |
195 |
ctataatgaaggccgtcgatctagcggtgttttagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgataca |
294 |
Q |
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| T |
45039939 |
ctataatgaaggccgtcgatctagcggtgttatagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgataca |
45039840 |
T |
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| Q |
295 |
aataacaattgcgttaatatgtgaccaattgttggtataagttttacattatagcttatctgaatttttgctttctgcatttttcatttcgtacttcaga |
394 |
Q |
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| T |
45039839 |
aataacaattgcgttaatatgtgaccaattgttggtataagttttacattatagcttatctgaatttttgctttctgcattttccatttcgtacttgaga |
45039740 |
T |
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| Q |
395 |
tctttttggttaacatagcagcaattggtattcattt |
431 |
Q |
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| T |
45039739 |
tctttttggttaacatagcagcaattagtattcattt |
45039703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 45040147 - 45039968
Alignment:
| Q |
18 |
aatctttacttacacttaatcattattggaattggatttgaagatgtatcattcaaatttctggggcaattgattcaaataagcttttgactgaaataac |
117 |
Q |
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| T |
45040147 |
aatctttacttacacttaatcattattggaattggatttgaagatgtatcattcgaatttctggggcaattgatccaaataagctcttgactgaaataac |
45040048 |
T |
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| Q |
118 |
aaaagctggaaaacatgctagactcattgttgcagatgatgttggcggccgtggtggtggacactctcactttcacccta |
197 |
Q |
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| T |
45040047 |
aaaagctggaaaacatgctagactcattgttgcagatgatgttggcggccgtggtggtggacactctcactttcacccta |
45039968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 224 - 397
Target Start/End: Complemental strand, 45043428 - 45043255
Alignment:
| Q |
224 |
ttttagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgatacaaataacaattgcgttaatatgtgaccaat |
323 |
Q |
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| T |
45043428 |
ttttagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatacaaataacaattgtgttattatgtgaccaat |
45043329 |
T |
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| Q |
324 |
tg-ttggtataagttttacattatagcttatctgaatttttgctttctgcatttttcatttcgtacttcagatct |
397 |
Q |
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| T |
45043328 |
tgattagtataagttttacattatagtttatctgaacttttg-gttctgcattttccattccgtacttcagatct |
45043255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 45043800 - 45043697
Alignment:
| Q |
63 |
gtatcattcaaatttctggggcaattgattcaaataagcttttgactgaaataacaaaagctggaaaacatgctagactcattgttgcagatgatgttgg |
162 |
Q |
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| T |
45043800 |
gtattattcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgctgaactcattgctgctaatgttgttgg |
45043701 |
T |
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| Q |
163 |
cggc |
166 |
Q |
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|||| |
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| T |
45043700 |
cggc |
45043697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 45047292 - 45047230
Alignment:
| Q |
340 |
acattatagcttatctgaatttttgctttctgcat-ttttcatttcgtacttcagatcttttt |
401 |
Q |
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| T |
45047292 |
acattatagtttatttgaatatttgctttctgcatttttttatttcgtactccggatcttttt |
45047230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 38346495 - 38346536
Alignment:
| Q |
357 |
aatttttgctttctgcatttttcatttcgtacttcagatctt |
398 |
Q |
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| T |
38346495 |
aatttttgctttctgcattttttatttagtacttcaaatctt |
38346536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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