View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_low_2 (Length: 808)

Name: NF1926_low_2
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_low_2
NF1926_low_2
[»] chr2 (16 HSPs)
chr2 (15-791)||(11533704-11534473)
chr2 (376-514)||(11533508-11533646)
chr2 (20-104)||(2916377-2916461)
chr2 (20-103)||(16973064-16973147)
chr2 (27-104)||(40987656-40987733)
chr2 (28-106)||(13559573-13559651)
chr2 (22-104)||(16973330-16973412)
chr2 (22-106)||(44594245-44594330)
chr2 (22-107)||(44594504-44594589)
chr2 (24-100)||(38982825-38982901)
chr2 (21-78)||(24126188-24126245)
chr2 (23-80)||(38982580-38982637)
chr2 (20-97)||(40987910-40987987)
chr2 (30-81)||(2916651-2916702)
chr2 (36-103)||(24125670-24125737)
chr2 (21-78)||(24125918-24125975)
[»] scaffold0781 (1 HSPs)
scaffold0781 (20-103)||(5299-5382)
[»] chr6 (11 HSPs)
chr6 (20-103)||(2216842-2216925)
chr6 (22-105)||(24690353-24690436)
chr6 (21-105)||(11644012-11644097)
chr6 (22-104)||(24798624-24798706)
chr6 (20-101)||(24690610-24690691)
chr6 (20-105)||(24798886-24798971)
chr6 (24-98)||(11643754-11643828)
chr6 (20-106)||(18494731-18494816)
chr6 (20-103)||(18494996-18495079)
chr6 (30-81)||(9955643-9955694)
chr6 (30-81)||(9954829-9954880)
[»] chr1 (11 HSPs)
chr1 (20-105)||(10824633-10824718)
chr1 (20-101)||(37189612-37189693)
chr1 (20-102)||(15825785-15825865)
chr1 (24-107)||(19056419-19056502)
chr1 (20-104)||(22683140-22683224)
chr1 (22-103)||(37189368-37189448)
chr1 (20-86)||(18844476-18844542)
chr1 (22-106)||(18844714-18844799)
chr1 (20-103)||(19056150-19056233)
chr1 (22-80)||(10824391-10824449)
chr1 (22-60)||(22683407-22683445)
[»] chr3 (10 HSPs)
chr3 (22-104)||(51663516-51663598)
chr3 (15-104)||(40244624-40244713)
chr3 (20-101)||(46003512-46003593)
chr3 (27-111)||(20538205-20538289)
chr3 (21-100)||(40364222-40364301)
chr3 (22-105)||(46003246-46003329)
chr3 (20-104)||(20537925-20538009)
chr3 (41-104)||(40244873-40244936)
chr3 (20-103)||(51663250-51663333)
chr3 (20-81)||(40364063-40364124)
[»] chr8 (12 HSPs)
chr8 (15-104)||(13884488-13884576)
chr8 (22-103)||(13884754-13884835)
chr8 (20-104)||(29714541-29714625)
chr8 (22-103)||(42126650-42126731)
chr8 (22-105)||(11867948-11868030)
chr8 (27-104)||(43416262-43416339)
chr8 (23-81)||(2554117-2554175)
chr8 (15-105)||(42126380-42126469)
chr8 (22-103)||(29714808-29714889)
chr8 (15-57)||(14996719-14996761)
chr8 (30-81)||(26746012-26746063)
chr8 (22-64)||(15862590-15862632)
[»] chr7 (12 HSPs)
chr7 (20-105)||(30862216-30862301)
chr7 (22-105)||(28715908-28715991)
chr7 (21-104)||(41985909-41985992)
chr7 (27-88)||(47373733-47373794)
chr7 (20-102)||(6474281-6474363)
chr7 (31-104)||(41986183-41986256)
chr7 (20-108)||(28715637-28715725)
chr7 (20-103)||(47373462-47373547)
chr7 (21-105)||(6474546-6474629)
chr7 (21-100)||(30862485-30862564)
chr7 (49-105)||(22226665-22226721)
chr7 (30-81)||(38408174-38408225)
[»] chr4 (11 HSPs)
chr4 (20-104)||(50509392-50509476)
chr4 (26-108)||(47097067-47097149)
chr4 (20-105)||(55173517-55173602)
chr4 (16-103)||(55173334-55173421)
chr4 (20-105)||(39161286-39161371)
chr4 (22-105)||(39161553-39161636)
chr4 (26-107)||(47096796-47096876)
chr4 (20-100)||(37996068-37996148)
chr4 (54-103)||(2623449-2623498)
chr4 (30-81)||(9738140-9738191)
chr4 (30-81)||(9738956-9739007)
[»] scaffold0060 (1 HSPs)
scaffold0060 (26-104)||(22975-23053)
[»] chr5 (2 HSPs)
chr5 (20-103)||(21249362-21249445)
chr5 (52-101)||(21249629-21249678)


Alignment Details
Target: chr2 (Bit Score: 667; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 15 - 791
Target Start/End: Original strand, 11533704 - 11534473
Alignment:
Q  15 catagggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatatgatatg 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11533704 catagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattgaataagcctatatgatatg 11533803  T
Q  115 acattttcagaagaacgatgtccggtgtggtaagtggtaagttgtttgctagttgggtacttgaaacgtcatgtatggtgtattggcatgcactctaacg 214  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  11533804 acattttcagaagaacgatgtccggtgtgg-------taagttgtttgctagttgggtacttgaaacgtcttgtatggtgtatttgcctgcactctaacg 11533896  T
Q  215 ctcaagttagtatttgagcaagaaaggatgttaaagaattgtaccttggaactcagtttaaagtctccttatatggtaaaggttcaagttgccaattgtc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  11533897 ctcaagttagtatttgagcaagaaaggatgttaaagaattgtacattggaactctgtttaaagtctccttatatagtaaaggttcaagttgccaattgtc 11533996  T
Q  315 cgatgattatagacaacatgattcattaccgttgagtgttacaaagtgatgatggggaagaggttacaatccgttggtttgaatttgtcactcttgcatt 414  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11533997 cgatgattatagacaacatgattcattactgttgagtgttacaaagtgatgatggggaagaggttacaatatgttggtttgaatttgtcactcttgcatt 11534096  T
Q  415 gcttcgatcacaccctctcttggagggggtgtagagttttattgatccatgttaaatcagcctaggttgttgggatttggattgcgtgtataggcttttg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||    
T  11534097 gcttcgatcacaccctctcttggagggggtgtagagttttattgatccatgttgaatcagcccagtatgttgggatttggattgcgtgtataggcttttg 11534196  T
Q  515 agcatttcaaaacagtagcccccgagtcgttattcttagggtcaagatgacgacttttaatagtttgatgttccatgtgagggaaaatattttatgttca 614  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11534197 agcatttcagaacagtagcccccaagtcgtcattcttagggtcaagatgacgacttttaacagtttgatgttccatgtgagggaaaatattttatgttca 11534296  T
Q  615 tgggaaacctttggttggatgtaattcatgaagagtttaagttcataaataactagtgacgatttcacagctcatttggagatttgggtgtcaaaaagtc 714  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11534297 tggaaaacctttggttggatgtaattcatgaagagtttaagttcataaagaactagtgacgatttcacagctcatttggagatttgggtgtcaaaaagtc 11534396  T
Q  715 ctaaagagcgtattgctcgtcgggtacttgtagtttgtgtgaaactttaagatttggttatgatgagttttagtcct 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11534397 ctaaagagcgtattgctcgtcgggtacttgtagtttgtgtgaaactttaagatttggttatgatgagttttagtcct 11534473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 376 - 514
Target Start/End: Original strand, 11533508 - 11533646
Alignment:
Q  376 ggttacaatccgttggtttgaatttgtcactcttgcattgcttcgatcacaccctctcttggagggggtgtagagttttattgatccatgttaaatcagc 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  11533508 ggttacaatccgttggtttgaatttgtcactcttgcattgcttcgatcacacactctcttggagggggtgtagagtgttattgatccatgttgaatcagc 11533607  T
Q  476 ctaggttgttgggatttggattgcgtgtataggcttttg 514  Q
    | |   ||||||||||||||||| ||| |||||||||||    
T  11533608 ccaatatgttgggatttggattgtgtgcataggcttttg 11533646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 2916461 - 2916377
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||    
T  2916461 ggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 16973147 - 16973064
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||    
T  16973147 ggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 40987733 - 40987656
Alignment:
Q  27 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  40987733 aaattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 13559573 - 13559651
Alignment:
Q  28 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 106  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataagcctat 13559651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 16973330 - 16973412
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||    
T  16973330 ggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 44594330 - 44594245
Alignment:
Q  22 ggaccaaattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 106  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  44594330 ggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctat 44594245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 44594504 - 44594589
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| | |||||||||||| |||||    
T  44594504 ggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataagactata 44594589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 38982825 - 38982901
Alignment:
Q  24 accaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||| |||||||    
T  38982825 accaaattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaagggacttggtgactgaataa 38982901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 24126188 - 24126245
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  24126188 gggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 38982637 - 38982580
Alignment:
Q  23 gaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 80  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  38982637 gaccaaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaa 38982580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 40987910 - 40987987
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaa 97  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||||| ||||||||||||||||| | ||||||||    
T  40987910 ggggaccaaattaatacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2916651 - 2916702
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaag 2916702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  36 caaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 24125918 - 24125975
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  24125918 gggaccaaattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 5299 - 5382
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5299 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 2216842 - 2216925
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  2216842 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 24690436 - 24690353
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  24690436 ggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 11644012 - 11644097
Alignment:
Q  21 gggaccaaattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  11644012 gggaccaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 11644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 24798706 - 24798624
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||  || |||||||||||||    
T  24798706 ggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 24690610 - 24690691
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 101  Q
    |||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| || | | ||||||||||||    
T  24690610 ggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 24798886 - 24798971
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||| || | | ||||||||||||||||    
T  24798886 ggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagccta 24798971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 11643828 - 11643754
Alignment:
Q  24 accaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaat 98  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||| | |||||||||    
T  11643828 accaaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 18494816 - 18494731
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 106  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||   |||||||||||||||||    
T  18494816 ggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaataaagttaagggaccatgtgattgaataagcctat 18494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 18494996 - 18495079
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||||| ||||||||||||||| |||| |||||| | | |||||||||||||||| |||  ||||||||||||||||    
T  18494996 ggggaccaaattgatacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9955643 - 9955694
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaag 9955694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 9954880 - 9954829
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaag 9954829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 10824633 - 10824718
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  10824633 ggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 37189612 - 37189693
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  37189612 ggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 15825785 - 15825865
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagc 102  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  15825785 ggggaccaaattggtacaaattatagttagg--accaaattgagacaatcaattaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 19056419 - 19056502
Alignment:
Q  24 accaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 107  Q
    |||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||    
T  19056419 accaaattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataagcctata 19056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 22683224 - 22683140
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || | | |||||||||||||||    
T  22683224 ggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 37189448 - 37189368
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  37189448 ggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaag-gaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 18844542 - 18844476
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacc 86  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  18844542 ggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaattaagttaagggacc 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 18844714 - 18844799
Alignment:
Q  22 ggaccaaattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 106  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| || | | |||||||||||||||||    
T  18844714 ggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataagcctat 18844799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 19056233 - 19056150
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| || | | ||||||||||||||    
T  19056233 ggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 10824449 - 10824391
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 80  Q
    ||||||||||| ||||||||||| ||||||||||||||||  | |||||||||||||||    
T  10824449 ggaccaaattgatacaaattataattaggggaccaaattgcaataatcaattaagttaa 10824391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 22683407 - 22683445
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaatt 60  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  22683407 ggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 51663516 - 51663598
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  51663516 ggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 40244713 - 40244624
Alignment:
Q  15 catagggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  40244713 cataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattgaataagcct 40244624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 46003512 - 46003593
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 101  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  46003512 ggggatcaaattggtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggaccagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 20538205 - 20538289
Alignment:
Q  27 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatatgat 111  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||  |||| | ||||||||||||| ||||||||    
T  20538205 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataagcttatatgat 20538289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 40364222 - 40364301
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 100  Q
    |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||   |||||||||||    
T  40364222 gggatcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtgattgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 46003329 - 46003246
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||  |||| | ||||||||||| ||||    
T  46003329 ggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataaaccta 46003246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 20538009 - 20537925
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |  ||||||||||||||| |||| ||||||| |||| ||||    
T  20538009 ggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggaccagatgattcaataggcct 20537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  41 tatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 51663333 - 51663250
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||| |||||| |||||||||||||||| |||||| ||| | ||||||||||||||||||||||| | ||||| ||||||||    
T  51663333 ggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagcc 51663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 40364124 - 40364063
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||| ||||||| ||||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  40364124 ggggatcaaattgatacaaattataattatgggaccaaattaagataatcaattaagttaag 40364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 13884576 - 13884488
Alignment:
Q  15 catagggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  13884576 cataggggg-ccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 13884754 - 13884835
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||    
T  13884754 ggaccaaattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 29714625 - 29714541
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  29714625 ggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 42126650 - 42126731
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| | ||||||||||||||    
T  42126650 ggaccaaattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 11867948 - 11868030
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  11867948 ggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaag-gaccaggtgattgaataagccta 11868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 43416339 - 43416262
Alignment:
Q  27 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    |||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  43416339 aaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 2554117 - 2554175
Alignment:
Q  23 gaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554117 gaccaaattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaag 2554175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 42126469 - 42126380
Alignment:
Q  15 catagggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||| |||||||| |||||||||||||||| | | |||||||||||||| |||||||||||| |||| | ||||||||||||||||    
T  42126469 cataggggg-ccaaattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagccta 42126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 29714808 - 29714889
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |||| | ||||  ||||||||    
T  29714808 ggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtgatcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 14996719 - 14996761
Alignment:
Q  15 catagggggaccaaattggtacaaattatagttaggggaccaa 57  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  14996719 catagggggatcaaattggtacaaattataattaggggaccaa 14996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 26746012 - 26746063
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||| |||| ||| |||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaag 26746063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 15862590 - 15862632
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgaga 64  Q
    ||||||||||  |||||||||||||||||||| ||||||||||    
T  15862590 ggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 30862301 - 30862216
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||    
T  30862301 ggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataagccta 30862216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28715908 - 28715991
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | | ||||||||||||||    
T  28715908 ggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataagccta 28715991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 41985992 - 41985909
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  41985992 gggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 47373733 - 47373794
Alignment:
Q  27 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctg 88  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  47373733 aaattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacctg 47373794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 6474363 - 6474281
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagc 102  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| || | | | |||||||||||    
T  6474363 ggggaccaaattgatataaattatagttaggggatcaaattgagacaatcaattaagttaagggatccggtaattgaataagc 6474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  31 tggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||| | |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 28715725 - 28715637
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatat 108  Q
    ||||||||||||| |||||||||||||||||  |||||||| | ||||| |||||||||||| |||| | ||||||||||| |||||||    
T  28715725 ggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataaacctatat 28715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 47373547 - 47373462
Alignment:
Q  20 ggggaccaaattggtacaaattatag--ttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||||||||   |||| ||| |||||||||||||||||||||||||||||| |   ||||||||||||||    
T  47373547 ggggaccaaattggtacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataagcc 47373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 6474546 - 6474629
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    |||| ||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| || | | ||||||||||||||||    
T  6474546 gggagcaaatcggtacaa-ttatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagccta 6474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 30862485 - 30862564
Alignment:
Q  21 gggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 100  Q
    |||||||||||| |||||||||||||||||| || ||||||| |||||||||| | ||||| ||||   |||||||||||    
T  30862485 gggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 22226665 - 22226721
Alignment:
Q  49 ggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    |||||||||||||||||||||||||||| |||| || | | ||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagccta 22226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 38408174 - 38408225
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaag 38408225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 50509392 - 50509476
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||    
T  50509392 ggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 47097067 - 47097149
Alignment:
Q  26 caaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatat 108  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  47097067 caaattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataagcctatat 47097149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 55173517 - 55173602
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  55173517 ggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 55173602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 55173421 - 55173334
Alignment:
Q  16 atagggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||||    
T  55173421 atagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaaccggatgatcgaataagcc 55173334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 39161371 - 39161286
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  || | | ||||||||||||||||    
T  39161371 ggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagccta 39161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 39161553 - 39161636
Alignment:
Q  22 ggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 105  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||| |||| |||||||||||||    
T  39161553 ggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaaggaaccggatggttgaataagccta 39161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 47096876 - 47096796
Alignment:
Q  26 caaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 107  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || | | ||||||||||||||||||    
T  47096876 caaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagcctata 47096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 37996148 - 37996068
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 100  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| || | ||||| || | | |||||||||||    
T  37996148 ggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 2623449 - 2623498
Alignment:
Q  54 ccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggaccgagtgattgaataagcc 2623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 9738191 - 9738140
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaag 9738140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9738956 - 9739007
Alignment:
Q  30 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 81  Q
    ||||||||||||||| |||||||||||| |||| |||| |||| ||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaag 9739007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 22975 - 23053
Alignment:
Q  26 caaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||    
T  22975 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 21249445 - 21249362
Alignment:
Q  20 ggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 103  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||||    
T  21249445 ggggactaaattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 21249629 - 21249678
Alignment:
Q  52 gaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 101  Q
    ||||||||| |||||||||||||||||||| |||  ||||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggacaagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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