View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1926_low_23 (Length: 272)
Name: NF1926_low_23
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 48580721 - 48580821
Alignment:
| Q |
32 |
ttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaaccaa |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
48580721 |
ttgcggatttacgggtgggttcacgcgggttgagaagattcataatagaaatttgaaaaaacagcagcctcacctcagatctatatcattcatcaaccaa |
48580820 |
T |
|
| Q |
132 |
c |
132 |
Q |
| |
|
| |
|
|
| T |
48580821 |
c |
48580821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 2064072 - 2064175
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| ||||||||||||||| |
|
|
| T |
2064072 |
gggttgcggttttacgggtgggttcacgcgggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctatatcattcatcaac |
2064171 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
2064172 |
caac |
2064175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 19862410 - 19862307
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| | ||||||||||||| |
|
|
| T |
19862410 |
gggttgcgggtttacgggtgggttcacgcgggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctacatcattcatcaac |
19862311 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
19862310 |
caac |
19862307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 19871880 - 19871777
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| | ||||||||||||| |
|
|
| T |
19871880 |
gggttgcgggtttacgggtgggttcacgcgggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctacatcattcatcaac |
19871781 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
19871780 |
caac |
19871777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 19876781 - 19876678
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| | ||||||||||||| |
|
|
| T |
19876781 |
gggttgcgggtttacgggtgggttcacgcgggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctacatcattcatcaac |
19876682 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
19876681 |
caac |
19876678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 36585662 - 36585559
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| ||||||||||||||| |
|
|
| T |
36585662 |
gggttgcgggtttacgggtgggttcacgctggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctatatcattcatcaac |
36585563 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
36585562 |
caac |
36585559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 19866979 - 19866876
Alignment:
| Q |
29 |
gggttgcgggtttacgggtgggttcacgcgggtttagaagattcataataaaaatttgaaaaaacagcatcctcacctcatatcaatatcattcatcaac |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| ||| | ||||||||||||| |
|
|
| T |
19866979 |
gggttgcgggtttacgggtggattcacgcgggttgagaagattcataatagaaatttgaaaaaacagtagcctcacctcagatctacatcattcatcaac |
19866880 |
T |
|
| Q |
129 |
caac |
132 |
Q |
| |
|
|||| |
|
|
| T |
19866879 |
caac |
19866876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University