View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_low_25 (Length: 248)

Name: NF1926_low_25
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_low_25
NF1926_low_25
[»] chr6 (4 HSPs)
chr6 (62-234)||(32876457-32876630)
chr6 (53-204)||(32881116-32881267)
chr6 (17-70)||(32876651-32876704)
chr6 (167-204)||(12501489-12501526)
[»] chr4 (1 HSPs)
chr4 (152-204)||(925081-925133)
[»] chr2 (1 HSPs)
chr2 (150-202)||(44085272-44085324)
[»] scaffold0027 (1 HSPs)
scaffold0027 (152-239)||(5081-5170)
[»] chr8 (2 HSPs)
chr8 (167-200)||(6806923-6806956)
chr8 (150-202)||(31666011-31666063)
[»] chr5 (2 HSPs)
chr5 (167-204)||(27440494-27440531)
chr5 (167-204)||(38690985-38691022)
[»] chr3 (1 HSPs)
chr3 (167-204)||(40419661-40419698)
[»] chr7 (1 HSPs)
chr7 (150-190)||(32919013-32919053)
[»] chr1 (1 HSPs)
chr1 (150-190)||(11812385-11812425)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 32876630 - 32876457
Alignment:
Q  62 ctaagccacgaggaggagaaatcatact-cttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 160  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32876630 ctaagccacgaggaggagaaatcgtactacttaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 32876531  T
Q  161 tagctatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttctt 234  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32876530 tagttatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttctt 32876457  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 32881116 - 32881267
Alignment:
Q  53 ccaactgatctaagccacgaggaggagaaatcatactcttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 152  Q
    |||||| |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32881116 ccaacttatctaagccacggggaggagaaatcgtactcctaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 32881215  T
Q  153 ataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 204  Q
    | ||||||||| |||| || |||||||||| || ||||||||||||||||||    
T  32881216 agaaatgatagttatataaccattttgtgataacttttaaacaattttctct 32881267  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 32876704 - 32876651
Alignment:
Q  17 tcaatgttagttttcttattatacataacataatatccaactgatctaagccac 70  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  32876704 tcaaagttagttttcttattatacctaacgtaatatccaactgatctaagccac 32876651  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 12501489 - 12501526
Alignment:
Q  167 tacaatcattttgtgacaatttttaaacaattttctct 204  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  12501489 tacaattattttgtgacaatttttaaacaactttctct 12501526  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 925133 - 925081
Alignment:
Q  152 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 204  Q
    |||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||    
T  925133 gataaatgatatttatacaaccattttgtgacaacttttagacaattttctct 925081  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 44085272 - 44085324
Alignment:
Q  150 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 202  Q
    |||||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  44085272 aagataaatgatatttatacaattattttgtgacaatttttggacaattttct 44085324  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 5081 - 5170
Alignment:
Q  152 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct--gggtcacattatgttcttattatctttcttctttt 239  Q
    ||||||| |||  |||||||||||||| | |||||||||| |||| |||||||   | |||||||||||| |||| |||| |||||||||    
T  5081 gataaattatatttatacaatcattttataacaatttttagacaactttctctcatgttcacattatgtttttatcatctctcttctttt 5170  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 6806923 - 6806956
Alignment:
Q  167 tacaatcattttgtgacaatttttaaacaatttt 200  Q
    ||||||||||||||||||| ||||||||||||||    
T  6806923 tacaatcattttgtgacaacttttaaacaatttt 6806956  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 31666063 - 31666011
Alignment:
Q  150 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 202  Q
    |||||||||||||  | ||||| ||||||||||||||||||| |||| |||||    
T  31666063 aagataaatgatatatgtacaaccattttgtgacaatttttagacaactttct 31666011  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 27440494 - 27440531
Alignment:
Q  167 tacaatcattttgtgacaatttttaaacaattttctct 204  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  27440494 tacaatcattttgtgacaacttttgaacaattttctct 27440531  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 38691022 - 38690985
Alignment:
Q  167 tacaatcattttgtgacaatttttaaacaattttctct 204  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  38691022 tacaattattttgtgacaatttttaaacaactttctct 38690985  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 40419698 - 40419661
Alignment:
Q  167 tacaatcattttgtgacaatttttaaacaattttctct 204  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  40419698 tacaatcattttgtgataatttttagacaattttctct 40419661  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 32919053 - 32919013
Alignment:
Q  150 aagataaatgatagctatacaatcattttgtgacaattttt 190  Q
    |||| ||||||||  ||||||||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcattttgtgacaattttt 32919013  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 11812385 - 11812425
Alignment:
Q  150 aagataaatgatagctatacaatcattttgtgacaattttt 190  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  11812385 aagagaaatgatagttgtacaatcattttgtgacaattttt 11812425  T

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