View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_27 (Length: 245)
Name: NF1926_low_27
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 29580307 - 29580089
Alignment:
| Q |
1 |
cctttagcttaaactatgaattgggtgcttctggttgtgcgtggatataagtaccttgttaggttgcatttctgtgatattgctagcattttgatgcggt |
100 |
Q |
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| T |
29580307 |
cctttagcttaaactatgaattgggtgcttctggttgtgcgtggatataagtaccttgttaggttgcatttctgtgatattgctagcattttgatgcggt |
29580208 |
T |
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| Q |
101 |
tgttatatttcaatgtttatgtgaatggttgtttggcttttgaatatttggatctctctttgattacatgtttacatattcgttggcttccccattttat |
200 |
Q |
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| T |
29580207 |
tgttatatttcaatgtttatgtgaatggttatttggcttttgaatatttggatctctctttgattacatgtttacatattcgctggcttccccattttat |
29580108 |
T |
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| Q |
201 |
gctgactttgttgtcgatg |
219 |
Q |
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||||||||||||||||||| |
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| T |
29580107 |
gctgactttgttgtcgatg |
29580089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 29584301 - 29584155
Alignment:
| Q |
15 |
tatgaattgggtgcttctggttgtgcgtggatataagtaccttgttaggttgcatttctgtgatattgctagcattttgatgcggttgttatatttcaat |
114 |
Q |
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||||| ||||||| ||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||| |
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| T |
29584301 |
tatgacttgggtgtttccagttgtgggtggatataagtatcttgttaggttgcatttttgtgatattgctagtatttcgatgcggttgttgtatttcaat |
29584202 |
T |
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| Q |
115 |
gtttatgtgaatggttgtttggcttttgaatatttggatctctcttt |
161 |
Q |
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|||||||||||||||| ||||||||| ||| |||| ||||||||||| |
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| T |
29584201 |
gtttatgtgaatggttatttggctttagaagatttcgatctctcttt |
29584155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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