View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_low_29 (Length: 237)

Name: NF1926_low_29
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_low_29
NF1926_low_29
[»] chr4 (24 HSPs)
chr4 (5-224)||(10199117-10199335)
chr4 (5-156)||(31307076-31307229)
chr4 (5-157)||(38766066-38766220)
chr4 (5-156)||(35972321-35972474)
chr4 (6-155)||(14854584-14854735)
chr4 (5-105)||(46016178-46016280)
chr4 (17-156)||(45994500-45994641)
chr4 (1-158)||(13686577-13686737)
chr4 (5-100)||(9012304-9012401)
chr4 (17-155)||(38844190-38844330)
chr4 (5-153)||(35334108-35334259)
chr4 (6-158)||(22189399-22189553)
chr4 (5-98)||(46250565-46250660)
chr4 (17-97)||(51626328-51626410)
chr4 (59-122)||(11140469-11140532)
chr4 (42-97)||(17135133-17135190)
chr4 (74-156)||(51853676-51853757)
chr4 (5-60)||(33529333-33529388)
chr4 (61-156)||(45695876-45695971)
chr4 (20-122)||(7096108-7096212)
chr4 (107-156)||(25768766-25768815)
chr4 (59-124)||(48998071-48998136)
chr4 (59-99)||(13948658-13948698)
chr4 (36-129)||(22017469-22017564)
[»] chr8 (12 HSPs)
chr8 (16-132)||(15682931-15683049)
chr8 (5-156)||(12958095-12958248)
chr8 (16-149)||(19715747-19715882)
chr8 (5-156)||(2743911-2744064)
chr8 (5-155)||(4125034-4125186)
chr8 (5-156)||(30935982-30936135)
chr8 (6-158)||(36994511-36994665)
chr8 (5-132)||(13468755-13468884)
chr8 (6-143)||(30056012-30056151)
chr8 (5-83)||(7839263-7839343)
chr8 (42-153)||(44638964-44639077)
chr8 (81-153)||(44705653-44705725)
[»] chr7 (17 HSPs)
chr7 (16-156)||(13254122-13254264)
chr7 (5-155)||(29059784-29059936)
chr7 (5-138)||(31492099-31492234)
chr7 (5-155)||(8839291-8839443)
chr7 (30-156)||(28537368-28537496)
chr7 (21-156)||(19477275-19477412)
chr7 (7-155)||(21747052-21747201)
chr7 (59-153)||(2657902-2657996)
chr7 (17-155)||(46373652-46373792)
chr7 (25-157)||(40099302-40099436)
chr7 (59-157)||(5905799-5905897)
chr7 (18-105)||(24172236-24172327)
chr7 (83-156)||(32469908-32469981)
chr7 (59-151)||(40211936-40212028)
chr7 (59-126)||(27484115-27484182)
chr7 (6-98)||(35707882-35707976)
chr7 (18-156)||(7265336-7265476)
[»] chr2 (23 HSPs)
chr2 (9-155)||(31579243-31579391)
chr2 (5-157)||(5394374-5394527)
chr2 (24-156)||(12133259-12133393)
chr2 (6-155)||(42745127-42745278)
chr2 (6-151)||(18105373-18105520)
chr2 (1-156)||(9438142-9438299)
chr2 (41-155)||(44732619-44732735)
chr2 (67-155)||(28365928-28366016)
chr2 (17-156)||(17981476-17981616)
chr2 (36-153)||(7157479-7157598)
chr2 (59-155)||(37568793-37568889)
chr2 (24-152)||(993736-993865)
chr2 (1-156)||(44752200-44752357)
chr2 (19-129)||(39401093-39401205)
chr2 (20-150)||(17627543-17627675)
chr2 (17-153)||(7020382-7020518)
chr2 (7-100)||(38373006-38373099)
chr2 (26-155)||(17672610-17672741)
chr2 (5-138)||(24412937-24413071)
chr2 (81-155)||(24359544-24359617)
chr2 (6-59)||(25423821-25423874)
chr2 (7-108)||(14121894-14121997)
chr2 (20-125)||(17658471-17658578)
[»] chr3 (19 HSPs)
chr3 (20-155)||(48204336-48204473)
chr3 (5-155)||(30995975-30996127)
chr3 (5-155)||(25224678-25224830)
chr3 (14-132)||(48210979-48211099)
chr3 (5-153)||(38331109-38331259)
chr3 (5-155)||(27763702-27763852)
chr3 (36-156)||(38088613-38088735)
chr3 (5-93)||(20861289-20861379)
chr3 (74-156)||(14352532-14352614)
chr3 (7-97)||(55123134-55123226)
chr3 (45-126)||(9651058-9651141)
chr3 (44-152)||(42514586-42514698)
chr3 (17-152)||(15283057-15283190)
chr3 (90-153)||(46604657-46604720)
chr3 (59-98)||(22755680-22755719)
chr3 (5-129)||(40294617-40294743)
chr3 (6-59)||(21223465-21223518)
chr3 (59-156)||(21465861-21465958)
chr3 (6-101)||(43621322-43621421)
[»] chr6 (10 HSPs)
chr6 (1-157)||(12411125-12411283)
chr6 (5-100)||(12836907-12837004)
chr6 (24-156)||(21910183-21910317)
chr6 (1-153)||(15614579-15614733)
chr6 (59-152)||(423637-423730)
chr6 (74-138)||(21029064-21029128)
chr6 (58-125)||(28099252-28099319)
chr6 (17-155)||(25084013-25084153)
chr6 (1-95)||(31412161-31412257)
chr6 (25-152)||(278374-278502)
[»] chr5 (11 HSPs)
chr5 (6-155)||(10591906-10592057)
chr5 (5-156)||(30784996-30785149)
chr5 (5-145)||(22188008-22188148)
chr5 (5-93)||(5123508-5123598)
chr5 (7-157)||(18909313-18909462)
chr5 (36-155)||(2804523-2804643)
chr5 (5-98)||(31113370-31113465)
chr5 (36-155)||(2798356-2798476)
chr5 (76-157)||(28023526-28023607)
chr5 (16-60)||(36212972-36213016)
chr5 (21-57)||(38951841-38951877)
[»] scaffold0182 (1 HSPs)
scaffold0182 (17-132)||(26333-26450)
[»] chr1 (21 HSPs)
chr1 (5-156)||(22022098-22022251)
chr1 (5-155)||(16756061-16756213)
chr1 (16-105)||(9781010-9781101)
chr1 (59-143)||(29124736-29124820)
chr1 (59-129)||(40019246-40019316)
chr1 (24-155)||(45806215-45806348)
chr1 (16-153)||(10840998-10841138)
chr1 (6-125)||(12035558-12035680)
chr1 (5-156)||(28724651-28724803)
chr1 (89-156)||(6607790-6607857)
chr1 (7-153)||(10750579-10750726)
chr1 (67-125)||(21774612-21774670)
chr1 (21-156)||(25655290-25655427)
chr1 (59-156)||(17600564-17600661)
chr1 (6-96)||(36806649-36806741)
chr1 (17-60)||(15642531-15642574)
chr1 (59-122)||(32883636-32883699)
chr1 (17-60)||(44913185-44913228)
chr1 (6-96)||(18428153-18428244)
chr1 (30-152)||(35692467-35692591)
chr1 (18-100)||(39547387-39547471)
[»] scaffold0020 (1 HSPs)
scaffold0020 (67-155)||(167834-167920)
[»] scaffold0009 (1 HSPs)
scaffold0009 (59-132)||(32330-32403)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 10199117 - 10199335
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaagttttaacgctgccgcatgcccaaggctggattcgaacccaagac 104  Q
    |||||||||| | ||||| ||| ||| || ||||| ||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||||||| ||||||    
T  10199117 ggagactattccttcgagtattatggaacttaaatgggcggcaagctctccttaagttttaacgctgccacatgctcaagt-tggattcgaacacaagac 10199215  T
Q  105 cctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtaggttgcaatctatttgtttcgatgcatctacttctattaaaattaagt 204  Q
    | || |||||||| ||||||| |||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10199216 cttggttaagttataagagacccgttccatctcatctaagcactcttggataggttgcaatctatttgtttcgatgcatctacttctattaaaattaagt 10199315  T
Q  205 aattaactaatataataatt 224  Q
    ||||||||||||||||||||    
T  10199316 aattaactaatataataatt 10199335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 31307076 - 31307229
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |    
T  31307076 ggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagg 31307175  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| || ||||| |||||||||| |||||| ||||| ||||| |||||||||||    
T  31307176 accttggttaagctagaagagacccgttccatctcatctaagtgctcttgggta 31307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 38766220 - 38766066
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||||||||||||| |||| |||| |||||||  |||||||||||  |||||||||||| |||||||||||||||||||| |||||| |    
T  38766220 ggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccagg 38766121  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    ||| || ||||| ||||||||||||||||| ||||| ||||||||||||| ||||    
T  38766120 accttggttaagctagaagagactcgttccatctcatctaagcgctcttgagtag 38766066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 35972474 - 35972321
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||||| ||| |||||||| |||| |||||||| ||||||||||  ||||||||||||| | ||||||| |||||||||||||||||||    
T  35972474 ggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattcgaacccaag 35972375  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| || ||||| |||||||| | |||||| ||||| |||||||||||||||||    
T  35972374 accttggttaagctagaagaggcccgttccatctcatctaagcgctcttgggta 35972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 14854735 - 14854584
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | ||||||| ||||| ||||| |||| ||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||  |    
T  14854735 gagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaa 14854636  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    || || ||||| |||||||||  |||||| ||||| ||||||||||||||||    
T  14854635 ccttggttaagctagaagagaaccgttccatctcatctaagcgctcttgggt 14854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 46016280 - 46016178
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||  ||||||||| |||| ||||||||||||||||||||||||||| |    
T  46016280 ggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagg 46016181  T
Q  103 acc 105  Q
    |||    
T  46016180 acc 46016178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 45994641 - 45994500
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    ||||||||||||| |||| |||| |||| || ||||||||||||  |||||||| ||  ||||||||||||||||||||||| ||| |||| || |||||    
T  45994641 ctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaag 45994542  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
     ||||||||||  ||||| ||||| |||| ||||||||||||    
T  45994541 ctagaagagacctgttccatctcatctaaacgctcttgggta 45994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 13686737 - 13686577
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa---gttttaacgctgccgcatgcccaaggctggattcgaac 97  Q
    |||||||||||| |  ||||||| ||||| |||| |||| | |||||| |||||||| |   ||||||||||||| ||| |||||||| |||||||||||    
T  13686737 ctgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaac 13686638  T
Q  98 ccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtagg 158  Q
    ||| |||| || |||||  ||||||||| | | || ||||| |||||||||||||||||||    
T  13686637 ccaggaccttggttaagcaagaagagacccatgccatctcatctaagcgctcttgggtagg 13686577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 9012401 - 9012304
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaaccca 100  Q
    |||||||| | ||||||||||||||||||| || | ||||||||||||||||||  ||||| ||| |||| |||||||||||||| ||||||||||||    
T  9012401 ggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctagattcgaaccca 9012304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 38844190 - 38844330
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    |||||||||||||||    |||| |||||||  |||| ||||||  |||||||||||  |||||||||| ||||||||||||| || |||| || |||||    
T  38844190 ctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaag 38844289  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
     ||||||||||||||||| |||||  ||||| || ||||||    
T  38844290 ctagaagagactcgttccatctcatttaagcacttttgggt 38844330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 35334108 - 35334259
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||| ||||||||||| |||| ||||||   ||||| |||||  ||||||| |||| ||||||||||||||| || |||||| |      
T  35334108 ggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaaga 35334207  T
Q  103 accctgattaagttagaagagactcgttccgtctcacct-aagcgctcttgg 153  Q
    ||| || ||||| ||||||||||| ||||| ||||| || ||||||||||||    
T  35334208 accttggttaagctagaagagacttgttccatctcatctaaagcgctcttgg 35334259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 22189399 - 22189553
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| |||||||||| |||||||||| | || |||||||| |||| ||||||  |||||| | ||| |||||| ||||| ||||||||||| |  ||    
T  22189399 gagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctgga 22189498  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtagg 158  Q
    || || ||||| |||||||||||| |  | ||||| ||||| ||||||| |||||    
T  22189499 ccttggttaagctagaagagactcatgtcatctcatctaagtgctcttgagtagg 22189553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 46250565 - 46250660
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    |||||||| ||| |||||||| |||||||| |||| ||||||| ||| ||| ||||  ||||||| |||| ||||||||||| |||||||||||||    
T  46250565 ggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgcccaagactggattcgaacc 46250660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 51626328 - 51626410
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaac 97  Q
    |||||||| ||||||||| |||| | |||||  ||||||||||  |||||||| |||| ||||||||||||||||||||||||    
T  51626328 ctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 11140532 - 11140469
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaaga 122  Q
    |||||||| ||||| ||||||||||||||||||||||| ||| |||| || ||||| |||||||    
T  11140532 agttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 17135190 - 17135133
Alignment:
Q  42 gcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaac 97  Q
    ||||||| |||||||||||  |||||||||||| |||||| |||||||||||||||||    
T  17135190 gcggcaaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaac 17135133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 51853757 - 51853676
Alignment:
Q  74 gcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||||||||||| |||||||||  | ||  || |||||||||||||||||| |||  ||||| |||||||||||||||||    
T  51853757 gcatgcccaaggctgaattcgaaccaga-actttggttaagttagaagagactcattctatctcatctaagcgctcttgggta 51853676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 33529388 - 33529333
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag 60  Q
    |||||||| | |||| || ||||||||||| |||| ||||||||||||||||||||    
T  33529388 ggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaag 33529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 45695876 - 45695971
Alignment:
Q  61 ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||||||||  ||||| ||||| ||||||| |||||| |||| || | ||  ||||| ||||||||||  ||||| ||||||| |||||||||    
T  45695876 ttttaacgctgctacatgctcaaggttggattcaaacccaggaccttggtcaaactagaaaagactcgttctatctcatctaagcgttcttgggta 45695971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 7096212 - 7096108
Alignment:
Q  20 gagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagtta 117  Q
    |||||||||  ||||||||| ||||| ||||||||||||  |||||||||  ||| |||| | |||| ||| |||| ||||||| ||| || ||||| ||    
T  7096212 gagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagcta 7096113  T
Q  118 gaaga 122  Q
    |||||    
T  7096112 gaaga 7096108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 25768766 - 25768815
Alignment:
Q  107 tgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    |||||||  |||||||||| |||||| ||||| |||||||||||||||||    
T  25768766 tgattaaactagaagagacccgttccatctcatctaagcgctcttgggta 25768815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 48998071 - 48998136
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagaga 124  Q
    |||||||||||||  ||||| ||||| || ||||||||| || |||| ||||||||||| ||||||    
T  48998071 agttttaacgctgatgcatgtccaagactcgattcgaactcaggaccttgattaagttaaaagaga 48998136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 13948658 - 13948698
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaaccc 99  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  13948658 agttttaacactgctgcatacccaaggctggattcgaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 22017564 - 22017469
Alignment:
Q  36 aaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgt 129  Q
    |||| ||||||||||| ||||||||  ||||||| ||||  ||| | |||| ||||||| ||| |||| |   |||||||||||||||||||||||    
T  22017564 aaataggcggcaagctttccctaagggttttaacactgctacatactcaagactggatttgaatccaaaattttgattaagttagaagagactcgt 22017469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 15683049 - 15682931
Alignment:
Q  16 cctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaa 113  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||| || |||| |||||||    
T  15683049 cctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaa 15682950  T
Q  114 gttagaagagactcgttcc 132  Q
    | |||||||||||||||||    
T  15682949 gctagaagagactcgttcc 15682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 12958095 - 12958248
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| |||| |||| || ||||||||||||  |||||||||||| |||||||||| ||||||||| |||||| |    
T  12958095 ggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatg 12958194  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| || ||||| ||||||||||| ||||| ||||| |||||| ||||||||||    
T  12958195 accttggttaagctagaagagactagttccatctcatctaagcactcttgggta 12958248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 19715747 - 19715882
Alignment:
Q  16 cctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaa 113  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||| |||| || ||||    
T  19715747 cctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaa 19715846  T
Q  114 gttagaagagactcgttccgtctcacctaagcgctc 149  Q
    | ||||| ||||  ||||| ||||| ||||||||||    
T  19715847 gctagaaaagacatgttccatctcatctaagcgctc 19715882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 2744064 - 2743911
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| |||| | || || ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |    
T  2744064 ggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagg 2743965  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| || ||||| |||||||||| |||||| ||||| ||||  |||||||||||    
T  2743964 accttggttaagctagaagagacccgttccatctcatctaaatgctcttgggta 2743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 4125034 - 4125186
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||||  |||||||  ||| |||||||||||||| |||||||||||| |    
T  4125034 ggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccagg 4125133  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||  || ||||| |||||||||| |||||| ||||| ||||| ||||||||||    
T  4125134 acattggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 4125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 30936135 - 30935982
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||||| |||||| ||||| |||| ||||||| ||||||||||||  |||||||| ||| ||||||  |||||||||||||||| || |    
T  30936135 ggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcagg 30936036  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| || |||||||||||||||| |||||| ||||| ||||| |||||||||||    
T  30936035 accttggttaagttagaagagacccgttccatctcatctaagtgctcttgggta 30935982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 36994511 - 36994665
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | |||||||| |||||||||| |||| ||| |||| |||||| ||||  |||||||||||| ||||| ||||||||||||||||||||| ||    
T  36994511 gagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccagga 36994610  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtagg 158  Q
    || || ||||  ||||||||||  || || ||| | |||||||||||||||||||    
T  36994611 ccttggttaaactagaagagacatgtgccatcttatctaagcgctcttgggtagg 36994665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 13468755 - 13468884
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | | ||||||||||||||||  |||| |||||||  ||||| |||||  ||||||||||||  |||||||||||||||||||||||||| |    
T  13468755 ggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccagg 13468854  T
Q  103 accctgattaagttagaagagactcgttcc 132  Q
    ||| || ||||| |||||||||| ||||||    
T  13468855 accttggttaagctagaagagacccgttcc 13468884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 30056012 - 30056151
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | ||||||||||||||| ||| |||| | ||||| ||||||||||||  |||||| ||||| ||||||| ||||||||||| ||||||| ||    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatga 30056111  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaa 143  Q
    || |  ||||| ||||||||||  ||||| ||||| ||||    
T  30056112 ccttcgttaagctagaagagacatgttccatctcatctaa 30056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 7839263 - 7839343
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaa 83  Q
    |||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||  |||||||| ||||| ||||||||||    
T  7839263 ggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatgcccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 44639077 - 44638964
Alignment:
Q  42 gcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcac 139  Q
    ||||||| |||||||||||  |||||||| ||  |||||| ||||| ||||||| ||  || |||| |||||||||||||||||||  || |  ||||||    
T  44639077 gcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggaccttgattaagttagaagagacatgtgcaatctcac 44638978  T
Q  140 ctaagcgctcttgg 153  Q
    ||||||| ||||||    
T  44638977 ctaagcgttcttgg 44638964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 44705725 - 44705653
Alignment:
Q  81 caaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    ||||||||||||||||||||||||| || ||||  ||||||||||  ||||| || || |||| |||||||||    
T  44705725 caaggctggattcgaacccaagaccttggttaaactagaagagacctgttccatcccatctaaacgctcttgg 44705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 13254122 - 13254264
Alignment:
Q  16 cctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaa 113  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||  ||| |||||||| ||||||| |||||||||||||||| || |||| || ||||    
T  13254122 cctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaa 13254221  T
Q  114 gttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    | |||||||||| |||||| ||||| |||||||||||||||||    
T  13254222 gctagaagagacccgttccatctcatctaagcgctcttgggta 13254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 29059936 - 29059784
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||| |||||||||||||| |||| ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |    
T  29059936 ggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagg 29059837  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||||||||| |||||| ||||| ||||| ||||||||||    
T  29059836 accttggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 29059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 31492234 - 31492099
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |    
T  31492234 ggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagg 31492135  T
Q  103 accctgattaagttagaagagactcgttccgtctca 138  Q
    ||| || ||||| |||||||||| |||||| |||||    
T  31492134 accttggttaagctagaagagacccgttccatctca 31492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 8839291 - 8839443
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||| ||||||||| |||||| |||||||   ||||||||||  |||||||||||| ||||||||||||||||||||||||||| |    
T  8839291 ggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccagg 8839390  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||||||||| |||| | ||||| ||||||||||||||||    
T  8839391 accttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 8839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 28537496 - 28537368
Alignment:
Q  30 ggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactc 127  Q
    ||||| |||| ||||||| ||||||||||||  |||||||| ||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |    
T  28537496 ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagaccc 28537397  T
Q  128 gttccgtctcacctaagcgctcttgggta 156  Q
    ||||| ||||| |||||||||||||||||    
T  28537396 gttccatctcatctaagcgctcttgggta 28537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 19477275 - 19477412
Alignment:
Q  21 agcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttag 118  Q
    |||||||||||||| |||| | ||||||||||||||||||  ||||||| |||  |||||||||||||||||||| ||||||  ||| || ||||| |||    
T  19477275 agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctag 19477374  T
Q  119 aagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||| |||||| ||||| |||| ||||||||||||    
T  19477375 aagagacccgttccatctcatctaaacgctcttgggta 19477412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 21747052 - 21747201
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagac 104  Q
    |||||| | ||||||| ||||||||||| |||| || || | ||||||||||||  |||||||||||| ||||||| || ||||||||||| |||| |||    
T  21747052 agactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcctaaagctggattcga-cccaggac 21747150  T
Q  105 cctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    | || |||||||||||||||| |||||| ||||| |||| |||||||||||    
T  21747151 cttggttaagttagaagagacccgttccatctcatctaaacgctcttgggt 21747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 2657902 - 2657996
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    |||||||||| ||| ||||||||||||||| ||| |||| || | || |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2657902 agttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaagcgctcttgg 2657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 46373792 - 46373652
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    ||||||||||||| |||| |||| ||||||||||||||||||  |||||||||| ||  | ||||||||| ||||||||||||||| || | || |||||    
T  46373792 ctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttgcttaag 46373693  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
     |||||||||| ||   | ||||| ||||| ||||||||||    
T  46373692 ctagaagagacccgcgtcatctcatctaagagctcttgggt 46373652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 40099302 - 40099436
Alignment:
Q  25 ttgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaaga 122  Q
    |||||||||  |||| ||||||||||||||||||||  |||||| ||||| ||||  |||| ||||||||||||  || || | |  ||||| |||||||    
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  123 gactcgttccgtctcacctaagcgctcttgggtag 157  Q
    ||| |||||| ||||| ||||||||||| ||||||    
T  40099402 gacccgttccatctcatctaagcgctctcgggtag 40099436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 5905897 - 5905799
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    |||||||| ||||| ||||||||||   ||||||| | || |||||  || ||||||||||||||||||||||  ||||| ||||||| | ||||||||    
T  5905897 agttttaatgctgctgcatgcccaatattggattcaagcctaagacgttggttaagttagaagagactcgttctatctcatctaagcgtttttgggtag 5905799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 24172327 - 24172236
Alignment:
Q  18 tcgagcattgtgggacctaaattggcggcaagctctccctaag----ttttaacgctgccgcatgcccaaggctggattcgaacccaagacc 105  Q
    ||||||||||||||| | || | |||||||||||||| |||||    |||||||| ||  |||||||||||| |||||||||||||| ||||    
T  24172327 tcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttgcatgcccaaggttggattcgaacccaggacc 24172236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 32469981 - 32469908
Alignment:
Q  83 aggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||| ||||||||| ||| | | |||||||| ||||||||||||||||| ||||| |||| |||| |||||||    
T  32469981 aggcttgattcgaactcaaaatcttgattaagctagaagagactcgttccatctcatctaaacgcttttgggta 32469908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 40212028 - 40211936
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctctt 151  Q
    |||||||||| ||  ||||||||||| ||||||| ||||||| |||| |||||||| || |||| |||| |  |||| || ||||||||||||    
T  40212028 agttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaagaaactcatgtcgtcacatctaagcgctctt 40211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 27484115 - 27484182
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagact 126  Q
    |||||||||||||| ||||||||| |||||||||  ||| || |||| || ||||| |||||||||||    
T  27484115 agttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagact 27484182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 35707976 - 35707882
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    ||||||| | ||||||||||||| ||| |||||| || |||||| ||||||||||  |||||||| ||  ||||| |||| | ||||||||||||    
T  35707976 gagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatgtccaaagttggattcgaacc 35707882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 7265336 - 7265476
Alignment:
Q  18 tcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagt 115  Q
    ||||| ||||||||||| ||||  || |||| |||||||||||  |||||||   || ||||||||||| || ||| ||||||||| ||  || |||||     
T  7265336 tcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagc 7265435  T
Q  116 tagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    |||||||||| |||  | |||||  ||| ||||||||||||    
T  7265436 tagaagagacccgtgtcatctcatataaacgctcttgggta 7265476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 31579243 - 31579391
Alignment:
Q  9 actatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaacccaagaccc 106  Q
    |||| |||||||||||||||||||| ||||| |||||||  ||||||||||  |||||||| |||  ||||||||||||||||||||||||||||||||     
T  31579243 actaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagacct 31579342  T
Q  107 tgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    |||||||| |||||||||| |||| | ||||| ||||| ||||||||||    
T  31579343 tgattaagctagaagagacccgttacatctcatctaagtgctcttgggt 31579391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 5394527 - 5394374
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | || |||||||||||||||| |||| ||||||| ||||||||||||  |||||||  ||| ||||||||||||||||||||||||||| |    
T  5394527 ggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctgcatgcccaaggctggattcgaacccagg 5394429  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    ||| || ||||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  5394428 accttggttaagctagaagagactcgttccatctcatctaagcgctctttggtag 5394374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 12133259 - 12133393
Alignment:
Q  24 attgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaag 121  Q
    ||||| ||||| |||| | ||||| ||||||||||||  |||||||| ||| ||||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  12133259 attgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaag 12133358  T
Q  122 agactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||||||| ||||| |||||||||||||||||    
T  12133359 agactcgttccatctcatctaagcgctcttgggta 12133393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 42745127 - 42745278
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | |||||| |||||||| ||| |||| ||| |||  |||||||||||  |||||||  ||| ||||||||||||||||||||||||||||||    
T  42745127 gagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaaga 42745226  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    || || ||||| || ||||||| |||||| ||||| ||||||||||||||||    
T  42745227 ccttggttaagctataagagacccgttccatctcatctaagcgctcttgggt 42745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 18105373 - 18105520
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | ||||||| |||||| |||  |||| ||||||| ||||||| ||||  |||||||| ||  ||||||||||||||||||||||||||| ||    
T  18105373 gagactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccagga 18105472  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctctt 151  Q
    || || ||||| ||||||||||||||||| |||||  |||||||||||    
T  18105473 ccttggttaagctagaagagactcgttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 9438142 - 9438299
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    ||||||| |||| | |||| |||||||||||||  |||| ||||||| | ||| ||||||  ||||||| |||| |||||||||||||||||||||||||    
T  9438142 ctgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaacc 9438241  T
Q  99 caagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
     |||||  || ||||| || |||||| ||||||| ||||| |||| ||||||||||||    
T  9438242 aaagactttggttaagctaaaagagattcgttccatctcatctaaacgctcttgggta 9438299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 44732619 - 44732735
Alignment:
Q  41 ggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctca 138  Q
    ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| || ||||| || ||||||| |||||| |||||    
T  44732619 ggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctca 44732718  T
Q  139 cctaagcgctcttgggt 155  Q
     ||||| ||||||||||    
T  44732719 tctaagtgctcttgggt 44732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 28366016 - 28365928
Alignment:
Q  67 cgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    |||||| ||||||||||||||| |||||||| || |||| || |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  28366016 cgctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggt 28365928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 17981616 - 17981476
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    |||||||||||||||||| |||||| ||||||||||||||||||  |||||| | ||  ||||||||||| |||||||  ||  || |||  || |||||    
T  17981616 ctcgagcattgtgggacccaaattg-cggcaagctctccctaagagttttaatgttgttgcatgcccaagactggatttaaattcaggactttggttaag 17981518  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
     ||||||||||||||||| ||||| ||||||||| |||||||    
T  17981517 ctagaagagactcgttccatctcatctaagcgctattgggta 17981476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 7157598 - 7157479
Alignment:
Q  36 aaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccg 133  Q
    |||| ||||||| ||||||||||||  |||||||| ||| |||||||||||||| |||||||||| | || | || ||||||||||||||||||||||      
T  7157598 aaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttcta 7157499  T
Q  134 tctcacctaagcgctcttgg 153  Q
    || || ||||||||| ||||    
T  7157498 tcccatctaagcgctattgg 7157479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 37568793 - 37568889
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| |||| || ||||| ||||||| || |||||| ||||| ||||| ||||||||||    
T  37568793 agttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctcttgggt 37568889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 993865 - 993736
Alignment:
Q  24 attgtgggacctaaattggcggcaagctctccctaagt-tttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaaga 122  Q
    ||||| ||||| |||| ||||||||| ||||||||||  ||| ||||||| |||||||||||| || ||||||||||| |||| || ||||| || ||||    
T  993865 attgtaggacccaaatgggcggcaagttctccctaagagttttacgctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataaga 993766  T
Q  123 gactcgttccgtctcacctaagcgctcttg 152  Q
    ||| |||  | ||||| |||||||||||||    
T  993765 gacacgtgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 44752200 - 44752357
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    |||||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||| |  |||||||||| ||  ||||||||||| || ||||||||||    
T  44752200 ctgtggagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacc 44752299  T
Q  99 caagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
     | ||   || ||||| ||||||||||| ||  | ||||| |||||||| ||||||||    
T  44752300 taggagtttggttaagctagaagagacttgtatcatctcatctaagcgcacttgggta 44752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 39401093 - 39401205
Alignment:
Q  19 cgagcattgtgggacctaaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagtt 116  Q
    ||||||||||||||||||||| | || | ||||||||||||  ||||||| | | | ||||||||||||||| ||||||| |||||| | || |||||||    
T  39401093 cgagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaatccaagatcttggttaagtt 39401192  T
Q  117 agaagagactcgt 129  Q
    | || ||||||||    
T  39401193 aaaaaagactcgt 39401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 17627675 - 17627543
Alignment:
Q  20 gagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagtta 117  Q
    |||| |||||||||  |||| ||| |||| || ||||||||  |||||||| ||  |||||||||||||||||||||||| || |||| || |||| |||    
T  17627675 gagccttgtgggactcaaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaatta 17627576  T
Q  118 gaagagactcgttccgtctcacctaagcgctct 150  Q
    |||||||| |||  | ||||  |||||||||||    
T  17627575 gaagagacgcgtgtcatctcgtctaagcgctct 17627543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 7020382 - 7020518
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag-ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagt 115  Q
    |||||||||||| ||||| |||| ||||||||| |||||||||| |||||||  ||| ||||||| ||   || |||||||  ||||||| || |||||     
T  7020382 ctcgagcattgtaggacccaaatgggcggcaagttctccctaagattttaacattgctgcatgcctaa-attgaattcgaattcaagaccttggttaagc 7020480  T
Q  116 tagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    |||||||||| ||| |  ||||| |||| |||||||||    
T  7020481 tagaagagacccgtgcaatctcatctaaacgctcttgg 7020518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 38373006 - 38373099
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaaccca 100  Q
    |||||| ||||| ||||||||||||||| |  | ||||||||||||| ||||||  ||||| |||||| ||||||  |||| ||||||||||||||    
T  38373006 agactaattccttgagcattgtgggaccca--tgggcggcaagctcttcctaagagttttaccgctgctgcatgcataaggttggattcgaaccca 38373099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 17672741 - 17672610
Alignment:
Q  26 tgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagag 123  Q
    ||||||||  |||| ||| |||| |||||||||||  |||||||| ||  |||||||||||| ||||||||||| || |||| || |||| || ||||||    
T  17672741 tgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaaatttgaagag 17672642  T
Q  124 actcgttccgtctcacctaagcgctcttgggt 155  Q
    || |||  | ||||  ||||||||||| ||||    
T  17672641 acgcgtgtcatctcgtctaagcgctctagggt 17672610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 24412937 - 24413071
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta-agttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    |||||||| |||||| || ||||||||||  |||| || |||||||||||| || |||||||||| ||| |||||  ||||| | ||||||||| |||||    
T  24412937 ggagactaattcctcaagtattgtgggactcaaataggtggcaagctctccttagagttttaacgttgctgcatg-tcaaggttagattcgaactcaaga 24413035  T
Q  104 cc-ctgattaagttagaagagactcgttccgtctca 138  Q
    ||  || ||||  |||||||||||||| || |||||    
T  24413036 cctttgcttaaactagaagagactcgtaccatctca 24413071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 24359617 - 24359544
Alignment:
Q  81 caaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||||||||||||| |||| | |||| ||||||||||||||||||||  || | | ||| ||||||||||||||||    
T  24359617 caaggctggattcaaacctaggaccttgattaagttagaagagact-atttcatatcatctaagcgctcttgggt 24359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 25423874 - 25423821
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa 59  Q
    ||||||| | ||||||||||||||||||| |||| ||||||| | |||||||||    
T  25423874 gagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 14121894 - 14121997
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagac 104  Q
    |||||| | ||||||||||||||||||  |||| ||||||||| |||| |||||  |||||||| ||| |||||  |||| ||| |||| ||| || |||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaattcaaactcaggac 14121993  T
Q  105 cctg 108  Q
    ||||    
T  14121994 cctg 14121997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 17658578 - 17658471
Alignment:
Q  20 gagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagtta 117  Q
    |||| |||||||||  |||| ||| |||| |||||||||||  |||||||| ||  |||||||||||||| ||||||||  || || | || |||| |||    
T  17658578 gagccttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggctagattcgaattcaggatcttggttaaatta 17658479  T
Q  118 gaagagac 125  Q
    ||||||||    
T  17658478 gaagagac 17658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 48204336 - 48204473
Alignment:
Q  20 gagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagtta 117  Q
    ||||||||||| ||| |||| | || |||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||| || ||||| ||    
T  48204336 gagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagcta 48204435  T
Q  118 gaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||||||||||||||| ||||| |||||| |||||||||    
T  48204436 gaagagactcgttccatctcatctaagcactcttgggt 48204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 30995975 - 30996127
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| | || |||||||  |||||||||||  |||||||||||  ||||||||||||  ||||||||||||| |    
T  30995975 ggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccagg 30996074  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  30996075 accttggttaagatagaagagacccgttccatctcatctaagcgctcttgggt 30996127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 25224830 - 25224678
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||| |||||||||||||||||||| ||||||||| ||||| ||||  |||||||||||| |||| |||||  || |||||||||||| |    
T  25224830 ggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcgaacccagg 25224731  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||||||||| |||| | ||||| ||||||||||||||||    
T  25224730 accttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 25224678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 48210979 - 48211099
Alignment:
Q  14 ttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgatt 111  Q
    ||||||||| |||||||||||||||| | ||||||||||||| ||||  |||||||| ||| |||||| |||||||||||||||||| || ||| |||||    
T  48210979 ttcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgatt 48211078  T
Q  112 aagttagaagagactcgttcc 132  Q
    |||||||||||||| ||||||    
T  48211079 aagttagaagagacccgttcc 48211099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 38331259 - 38331109
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||| | |||||||||||| |||| |||||||||||||| |||||  |||||||||||| |||||| ||| | ||||||| ||| || |    
T  38331259 ggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctgcatgctcaaagttggattcaaactcagg 38331160  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    ||  || |||||||||||||||| || ||| ||||| ||||||||||||||    
T  38331159 acattggttaagttagaagagacccgatccatctcatctaagcgctcttgg 38331109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 27763852 - 27763702
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||  |||| | |||||  |||||||||||  ||||||| |||  | ||||||||||||||||||||||||| |    
T  27763852 ggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaacccagg 27763753  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||  ||||| |||||  ||||| ||||||||||||||||    
T  27763752 accttggttaagctag--gagacccgttctatctcatctaagcgctcttgggt 27763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 38088735 - 38088613
Alignment:
Q  36 aaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccg 133  Q
    |||| ||||||||| ||||||||||  |||||||||| | |||||||||| ||||||||||||||    ||| || ||||| |||||||||| |||| |     
T  38088735 aaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttca 38088636  T
Q  134 tctcacctaagcgctcttgggta 156  Q
    ||||| |||||||||||||||||    
T  38088635 tctcatctaagcgctcttgggta 38088613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 20861379 - 20861289
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattc 93  Q
    |||||||| | ||||||||||| ||| ||| |||| ||||||| ||||||||||  |||||||||||||| |||||||||| |||||||||    
T  20861379 ggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 14352614 - 14352532
Alignment:
Q  74 gcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||| ||||||||||||||||||| || | | || ||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  14352614 gcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaagcgctcttgggta 14352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 55123226 - 55123134
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaac 97  Q
    |||||| | |||||||||||||| |||| |||| ||  ||||||||||||||||  |||||||||||| ||||  ||||||||||||||||||    
T  55123226 agactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 9651141 - 9651058
Alignment:
Q  45 gcaagctctccctaagt--tttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagact 126  Q
    ||||||||||||||| |  ||||||| ||  ||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  9651141 gcaagctctccctaactattttaacgttgttgcatgtccaaggctgaattcgaacccaagaccatgattaaattagaagagact 9651058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 42514698 - 42514586
Alignment:
Q  44 ggcaagctctccctaag--ttttaacgc--tgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcac 139  Q
    |||||||||||||||||  |||||||||  ||  |||||||||| | ||||||||||||||||||  |  ||||| |||||||||| |||| | |||||     
T  42514698 ggcaagctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcat 42514599  T
Q  140 ctaagcgctcttg 152  Q
    |||||||||||||    
T  42514598 ctaagcgctcttg 42514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 15283190 - 15283057
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    |||||||||||||||||| |||| |||||||| || ||| ||  |||||||| | ||| ||||||||| | ||||||||||||||   ||| |  |||||    
T  15283190 ctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaa-gatgctgcatgcccatgactggattcgaaccc---accttagttaag 15283095  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttg 152  Q
    |||||||||||||||  | ||||| |||| ||||||||    
T  15283094 ttagaagagactcgtatcatctcatctaaacgctcttg 15283057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 46604657 - 46604720
Alignment:
Q  90 attcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    |||||||||||  ||| || |||||||| |||||||||||||| ||||| ||||||||||||||    
T  46604657 attcgaacccagaaccttggttaagttataagagactcgttccatctcatctaagcgctcttgg 46604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 22755719 - 22755680
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  22755719 agttttaatgctgctgcatgcccaaggctggattcgaacc 22755680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 40294743 - 40294617
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | | ||||| |||||||||   ||||  |||||||||| ||||||||  |||||||  ||  ||||  |||||||||||||||||| || |    
T  40294743 ggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactcagg 40294644  T
Q  103 accctgattaagttagaagagactcgt 129  Q
    ||| |||||||| |||| |||||||||    
T  40294643 accttgattaaggtagaggagactcgt 40294617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 21223465 - 21223518
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa 59  Q
    ||||||| || || ||||||||||||| |||||| |||| ||||||||||||||    
T  21223465 gagactaatttcttgagcattgtgggatctaaataggcgacaagctctccctaa 21223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 21465958 - 21465861
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||||||||||| | |||  |||| ||||||||||||||  | | |||| ||||||||||| || |||  | ||||| ||||||| |||||||||    
T  21465958 agttttaacgctgccacgtgcgtaaggatggattcgaacccagaatcttgatgaagttagaagaaacacgtgtcatctcatctaagcgttcttgggta 21465861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 43621322 - 43621421
Alignment:
Q  6 gagactatttcctcgagcatt-gtgggacctaaattggcggcaagctctccct--aagttttaacgctgccgcatgccc-aaggctggattcgaacccaa 101  Q
    ||||||| | ||||||||||| ||| ||| ||||| || ||||||||||||||  ||||||||||| ||| |||| ||| |||  |||||||||||||||    
T  43621322 gagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaacgttgctgcatacccaaagtttggattcgaacccaa 43621421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 12411283 - 12411125
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    |||||||||||| | |||| ||||||||||||| ||||| |||||||  |||| ||||||  |||||||||||| ||||||||||||||||||||||||     
T  12411283 ctgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaact 12411184  T
Q  99 caagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    || |||| || ||||||||||||||||  ||||| ||||| |||||| ||||| |||||    
T  12411183 caggaccttggttaagttagaagagacctgttccatctcatctaagcactcttaggtag 12411125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 12836907 - 12837004
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaaccca 100  Q
    |||||||| | |||| |||||||||||||| |||| |||||| |||||||||||||  |||||||||||| ||||||| |||||||||||||||||||    
T  12836907 ggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaaccca 12837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 21910317 - 21910183
Alignment:
Q  24 attgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaag 121  Q
    ||||||||||||||||  ||||||  ||||| |||||  |||||||| ||  ||||||||||||||||||||||||||| || | || ||||| ||||||    
T  21910317 attgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaag 21910218  T
Q  122 agactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||| ||| | ||||| |||| ||||||||||||    
T  21910217 agacttgtttcatctcatctaaacgctcttgggta 21910183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15614579 - 15614733
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccc--taagttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    ||||| |||||| ||||| ||||||||||||||  |||| || || ||| ||| ||   ||||||||||| |||  |||| ||||| ||| |||||||||    
T  15614579 ctgtgaagactaattcctagagcattgtgggactcaaataggtggtaagttcttccgaaaagttttaacgttgctacatgtccaagactgaattcgaacc 15614678  T
Q  99 caagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    || |||  || ||||||||||||||||||||||| |||||  |||||||||||||    
T  15614679 catgacattggttaagttagaagagactcgttccatctcatataagcgctcttgg 15614733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 423730 - 423637
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttg 152  Q
    |||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||  |||||||||   ||||| ||||| |||||||||||||    
T  423730 agttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 21029064 - 21029128
Alignment:
Q  74 gcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctca 138  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||||| ||| || |||||    
T  21029064 gcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagacccgtgccatctca 21029128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 28099319 - 28099252
Alignment:
Q  58 aagttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagac 125  Q
    |||||||||| |||| ||||||||||||||||||||||||||| |||| |  ||||| ||||||||||    
T  28099319 aagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagagac 28099252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 25084153 - 25084013
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    |||||||||||||| || ||||| |  | |||||||||||||||  |||||||  ||| ||||| ||||| ||| |||||||| ||||||  ||||||||    
T  25084153 ctcgagcattgtggaacttaaatggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaag 25084054  T
Q  115 ttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
     ||||||||||| ||  | ||||| ||||| | ||||||||    
T  25084053 ctagaagagacttgtgtcatctcatctaagtgttcttgggt 25084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31412257 - 31412161
Alignment:
Q  1 ctgtggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcga 95  Q
    |||||||||||| || |||||||||||||| ||| |||| |||||||  |||||||||  ||||||||| |||| ||| |||||| |||| ||||||    
T  31412257 ctgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctgcacgcccaaagctgaattcga 31412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 278502 - 278374
Alignment:
Q  25 ttgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaaga 122  Q
    ||||||||||||||| | |||||| |||||| ||||  |||||| | ||  |||||||||| ||||||||| ||| ||||||| |  ||||| |||||||    
T  278502 ttgtgggacctaaatggacggcaaactctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagaccttagttaagctagaaga 278404  T
Q  123 gactcgttccgtctcacctaagcgctcttg 152  Q
    |||||||  | ||||| |||| ||||||||    
T  278403 gactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 10592057 - 10591906
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaaga 103  Q
    ||||||| | ||||||||||||||||||  |||| |||||||  |||||||||||  ||||||| |||| ||||||||||||||||||||||||||| ||    
T  10592057 gagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagga 10591958  T
Q  104 ccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    || || ||||  |||||||||| |||||| ||||| ||||| ||||||||||    
T  10591957 ccttggttaatctagaagagacccgttccatctcatctaagtgctcttgggt 10591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 30784996 - 30785149
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||| || ||||||| ||||||||| |  ||||   ||||||||||  |||||||| ||| ||||| |||| ||||||||||||||||||    
T  30784996 ggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtccaaagctggattcgaacccaag 30785095  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||  |||||||| ||||||||||||||||| ||||| ||||  |||||||||||    
T  30785096 acattgattaagctagaagagactcgttccatctcatctaaatgctcttgggta 30785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 22188008 - 22188148
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaagttttaacgctgccgcatgcccaaggctggattcgaacccaagac 104  Q
    |||||||| | |||| || ||||||||||| |||| |||||||  ||||||   |||||||||||||  | |||||||||||||||||| ||||||| ||    
T  22188008 ggagactaatccctctagtattgtgggacccaaataggcggcagactctccaagagttttaacgctgttgtatgcccaaggctggattcaaacccaatac 22188107  T
Q  105 cctgattaagttagaagagactcgttccgtctcacctaagc 145  Q
    | || ||||||||||||||| ||||||  ||||| ||||||    
T  22188108 cttggttaagttagaagagattcgttcaatctcatctaagc 22188148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 5123508 - 5123598
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattc 93  Q
    |||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||  ||||||||| |||| ||||||||||||||| ||||    
T  5123508 ggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 18909313 - 18909462
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagac 104  Q
    |||||| | |||||||||||||||||   ||||  |||||||  ||||||||||  ||||||| |||| |||| |||||||||||||||||||| | |||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggac 18909412  T
Q  105 cctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    | |||||||| |||||   || |||||  ||||| ||||||||||||| ||||    
T  18909413 cttgattaagctagaa---acccgttctatctcatctaagcgctcttgagtag 18909462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 2804523 - 2804643
Alignment:
Q  36 aaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccg 133  Q
    |||| ||||| |||||||||||||  ||||||||||||| |||||| ||||| ||||||||||||||| ||| || ||||| ||||||| || |||| |     
T  2804523 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaagaaac-cgtttca 2804621  T
Q  134 tctcacctaagcgctcttgggt 155  Q
    ||||| ||||  ||||||||||    
T  2804622 tctcatctaactgctcttgggt 2804643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 31113465 - 31113370
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacc 98  Q
    |||||||| | ||||||| ||||||||| | |||| ||||| | ||||||||||||  ||||||| |||| ||||||||||||||| |||||||||    
T  31113465 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 31113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 2798356 - 2798476
Alignment:
Q  36 aaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccg 133  Q
    |||| ||||| |||||||||||||  ||||||||||||| |||||| ||||| ||||||||||||||  ||| || ||||| ||||||| || |||| |     
T  2798356 aaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaagaaac-cgtttca 2798454  T
Q  134 tctcacctaagcgctcttgggt 155  Q
    ||||| ||||  ||||||||||    
T  2798455 tctcatctaactgctcttgggt 2798476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 28023526 - 28023607
Alignment:
Q  76 atgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggtag 157  Q
    ||||| |||||||||||||||| || |||  || ||||| |||||||||  |||||| ||||| ||||||||||||||||||    
T  28023526 atgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaagcgctcttgggtag 28023607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 36213016 - 36212972
Alignment:
Q  16 cctcgagcattgtgggacctaaattggcggcaagctctccctaag 60  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  36213016 cctcgagcattgtgggacctaaatgggcggcaaactctccctaag 36212972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 38951877 - 38951841
Alignment:
Q  21 agcattgtgggacctaaattggcggcaagctctccct 57  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  38951877 agcattgtgggacctaaattgacggtaagctctccct 38951841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 26450 - 26333
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaag 114  Q
    ||||| |||||||||||| |||| ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||||||| |||| || |||||    
T  26450 ctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaag 26351  T
Q  115 ttagaagagactcgttcc 132  Q
     |||||||||| ||||||    
T  26350 ctagaagagacccgttcc 26333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 22022251 - 22022098
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||  ||||||||||| |||| || |||||| ||||||||||  |||||| ||||| |||||||||||||||||||||||||||      
T  22022251 ggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccaca 22022152  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||| |  ||||| ||||||||||  ||||| ||||| |||| ||||||||||||    
T  22022151 accttagttaagctagaagagacctgttccatctcatctaaacgctcttgggta 22022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 16756213 - 16756061
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | ||||||||||||||||||| ||||   || || ||||||||||||  |||||||||| | |||||||||| |||| |||| ||||||      
T  16756213 ggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccaga 16756114  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    ||| || ||||| |||||||||  |||||| ||||| ||||||||||||||||    
T  16756113 accttggttaagctagaagagatccgttccatctcatctaagcgctcttgggt 16756061  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 9781010 - 9781101
Alignment:
Q  16 cctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagacc 105  Q
    ||||||||||||||||||| |||| ||||||   |||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||    
T  9781010 cctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaagacc 9781101  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 29124820 - 29124736
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaa 143  Q
    |||||||||||||| |||||||||| ||||||||||||| || ||||||| ||||| ||||||||||||||| | ||||| ||||    
T  29124820 agttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaa 29124736  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 40019316 - 40019246
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgt 129  Q
    |||||||||| ||| ||||  ||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  40019316 agttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgt 40019246  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 45806348 - 45806215
Alignment:
Q  24 attgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaag 121  Q
    |||||| ||| ||||| ||||| | ||||||||||||  ||||||  |||| ||||||||||| ||| |||||||| || |||| || ||||| ||||||    
T  45806348 attgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaag 45806249  T
Q  122 agactcgttccgtctcacctaagcgctcttgggt 155  Q
    |||| |||||  ||||| |||||||||| |||||    
T  45806248 agacccgttctatctcatctaagcgctcctgggt 45806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 10841138 - 10840998
Alignment:
Q  16 cctcgagcattgtgggacc-taaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgatta 112  Q
    |||| |||||||||||||| ||||| || |||||| ||||||||||  |||||||| ||   |||||||||||||| ||| |||||||| | | || |||    
T  10841138 cctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatcttggtta 10841039  T
Q  113 agttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
    || ||||||||||  ||| | ||||| ||||||||||||||    
T  10841038 agatagaagagacctgtttcatctcatctaagcgctcttgg 10840998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 12035680 - 12035558
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag---ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    ||||||| | ||||||||||||||||||| |||| |||||||  |||||||||||   |||||||  ||  ||||||| ||||||||||||||||| |||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaaccaaag 12035581  T
Q  103 accctgattaagttagaagagac 125  Q
    ||  || ||||  ||||||||||    
T  12035580 actttggttaaactagaagagac 12035558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 28724803 - 28724651
Alignment:
Q  5 ggagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaag 102  Q
    |||||||| | |||||| |||||| ||||  |||| | |||||  |||| ||||||  ||||||| |||  |||||  |||||||| ||||||| ||| |    
T  28724803 ggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatccagg 28724704  T
Q  103 accctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||  | |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  28724703 acttt-attaagctagaagagactcgttccatctcatctaagcgctcttgggta 28724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 6607790 - 6607857
Alignment:
Q  89 gattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    ||||||||| ||||||| |||||||||||||||||||||||  | || || ||||||| |||||||||    
T  6607790 gattcgaactcaagaccatgattaagttagaagagactcgtgtcatcccatctaagcgttcttgggta 6607857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 10750726 - 10750579
Alignment:
Q  7 agactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta-agttttaacgctgccgcatgcccaaggctggattcgaacccaagacc 105  Q
    |||||| | |||||| ||||||| || | |||| |||||||||| | ||  | |||||||||||||  | |||||||||  | |||||||||||||||||    
T  10750726 agactaatccctcgaacattgtgcgatccaaatgggcggcaagcgcacctaagagttttaacgctgatgtatgcccaagattagattcgaacccaagacc 10750627  T
Q  106 ctgattaagttagaagagactcgttccgtctcacctaagcgctcttgg 153  Q
     || |||| |||||| ||||  ||| | ||||| ||||||||||||||    
T  10750626 ttggttaaattagaaaagacatgtttcatctcatctaagcgctcttgg 10750579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 21774670 - 21774612
Alignment:
Q  67 cgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagac 125  Q
    |||||| ||||| ||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  21774670 cgctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagac 21774612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 25655290 - 25655427
Alignment:
Q  21 agcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttag 118  Q
    ||||||||| ||  ||||| | |||||| ||||| |||||  |||||||| ||| |||||||||| | |  |||||||||||  ||| ||||||||||||    
T  25655290 agcattgtgtgatttaaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttag 25655389  T
Q  119 aagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    |||| | | ||||| ||||| |||| |||| |||||||    
T  25655390 aagatatttgttccatctcatctaaacgctattgggta 25655427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 17600564 - 17600661
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggta 156  Q
    |||||||||| ||  |||||| |||||||| |||| ||||||||||| || ||||| |||||||||| |||  | ||||| |||| |||| |||||||    
T  17600564 agttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgcttttgggta 17600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 36806741 - 36806649
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctcccta--agttttaacgctgccgcatgcccaaggctggattcgaa 96  Q
    ||||||| | ||||||||||||||| ||| |||| |||||||  | |||||||  |||||||||||| | | ||||||||||||| |||||||    
T  36806741 gagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatgcccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 15642574 - 15642531
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag 60  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  15642574 ctcgagcattgtgggacccaaatgggcggcaaactctccctaag 15642531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 32883636 - 32883699
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaaga 122  Q
    |||||||||||||| ||||| |||| ||||||||||||||||| | | || ||||| |||||||    
T  32883636 agttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 44913228 - 44913185
Alignment:
Q  17 ctcgagcattgtgggacctaaattggcggcaagctctccctaag 60  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  44913228 ctcgagcattgtgggacccagatgggcggcaagctctccctaag 44913185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 18428153 - 18428244
Alignment:
Q  6 gagactatttcctcgagcattgtgggacctaaattggcggcaagctctccctaa--gttttaacgctgccgcatgcccaaggctggattcgaa 96  Q
    ||||||| | |||||||||||||||| || |||| | | |||  ||||||||||  |||||||| |||| |||||||||||| ||||||||||    
T  18428153 gagactaatccctcgagcattgtggggcc-aaatggacagcagactctccctaaaagttttaacactgctgcatgcccaaggttggattcgaa 18428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 35692591 - 35692467
Alignment:
Q  30 ggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactc 127  Q
    ||||||||||  ||||||| |||||||||||  ||||||||  |  |||||||||| | ||||||||||| ||||||  || ||||  ||||| |||| |    
T  35692591 ggacctaaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagaccc 35692492  T
Q  128 gttccgtctcacctaagcgctcttg 152  Q
     | || ||||| |||||||||||||    
T  35692491 atgccatctcatctaagcgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 39547387 - 39547471
Alignment:
Q  18 tcgagcattgtgggacctaaattggcggcaagctctccctaag--ttttaacgctgccgcatgcccaaggctggattcgaaccca 100  Q
    |||| ||||||| ||||||||| |||||||  ||| |||||||  |||| || |||| |||||| |||| |||||||||||||||    
T  39547387 tcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaagactggattcgaaccca 39547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 167920 - 167834
Alignment:
Q  67 cgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttccgtctcacctaagcgctcttgggt 155  Q
    |||||| ||||||||||||||||||| ||||||  |||| |||||||| |||||||||| |||| | ||||| ||||||||||||||||    
T  167920 cgctgctgcatgcccaaggctggatttgaaccc--gaccttgattaagctagaagagacccgtttcatctcatctaagcgctcttgggt 167834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 32330 - 32403
Alignment:
Q  59 agttttaacgctgccgcatgcccaaggctggattcgaacccaagaccctgattaagttagaagagactcgttcc 132  Q
    |||||||||||||| |||| ||||||  ||||||||||||||  ||| || | ||| |||||||||| ||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttcc 32403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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