View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1926_low_3 (Length: 693)

Name: NF1926_low_3
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1926_low_3
NF1926_low_3
[»] chr2 (1 HSPs)
chr2 (11-674)||(14768695-14769357)
[»] chr8 (9 HSPs)
chr8 (161-439)||(7166591-7166869)
chr8 (161-317)||(3269111-3269267)
chr8 (131-350)||(31173812-31174031)
chr8 (161-297)||(3264453-3264589)
chr8 (166-317)||(3288384-3288535)
chr8 (222-435)||(3400608-3400821)
chr8 (237-315)||(13806935-13807013)
chr8 (217-314)||(13785638-13785735)
chr8 (212-312)||(3409295-3409395)
[»] chr5 (3 HSPs)
chr5 (162-312)||(30415929-30416079)
chr5 (235-438)||(20836335-20836538)
chr5 (235-438)||(20809980-20810183)
[»] chr3 (2 HSPs)
chr3 (154-291)||(32412883-32413020)
chr3 (179-281)||(6907789-6907891)
[»] scaffold0468 (1 HSPs)
scaffold0468 (193-300)||(8209-8316)


Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 11 - 674
Target Start/End: Original strand, 14768695 - 14769357
Alignment:
Q  11 acatcatcaagtacaatgaatacctttttccctctaagtcttgtctccaacttatttgctcccaacccaatgctatctatcttctcctttgttttcaggg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14768695 acatcatcaagtacaatgaatacctttttccctctaagtcttgtctccaacttatttgctcccaacccaatactatctatcttctcctttgttttcaggg 14768794  T
Q  111 catctgaaagaannnnnnnctgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaactt 210  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14768795 catctgaaagaatttttttctgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaactt 14768894  T
Q  211 gcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttca 310  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14768895 gcgatgaattcgattgtagatggatttggctgtggttgttttaccagatccacccattccctagatccctatcatacaaacattgcttgaatgtttttca 14768994  T
Q  311 ataaactcggcaactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaa 410  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14768995 ataaactcggccactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccgacaa 14769094  T
Q  411 tttgctttactagttcaccttcattccttagataattataaaacacaaaacaacacaacacatagaatgagaataaattacnnnnnnnnnnctatagggc 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| |||    
T  14769095 tttgctttactagttcaccttcattccttagataattataaaacacaaaacaacacaacacatagaatgagaataaattac-aaaaaaaaactataaggc 14769193  T
Q  511 tctatttggccagatcaaaccactagtttatagaggaaagttatagcgcatgaacttgtatgctcaaagtaaggtcattctctaatgagtttataatgtt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769194 tctatttggccagatcaaaccactagtttatagaggaaagttatagcgcatgaacttgtatgctcaaagtaaggtcattctctaatgagtttataatgtt 14769293  T
Q  611 tcttcactagattatagcgaattttgacatgctactttaagcaacgtttgaacttataacttac 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14769294 tcttcactagattatagcgaattttgacatgctactttaagcaacctttgaacttataacttac 14769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 161 - 439
Target Start/End: Original strand, 7166591 - 7166869
Alignment:
Q  161 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 260  Q
    ||||||||  ||||||| |  ||||||| ||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||||||||||||| || |    
T  7166591 ttttcacatacttctctaacgttttcaatgaaacttctattcaaaaatttgcgatgaatttgattatagatggctttggctgtggttgttttacccgacc 7166690  T
Q  261 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcacacgaggttccaacccaactgggaactc 360  Q
      ||||||||||| ||||||||||||||||| |||||||  ||  || ||||||| ||   |||||| ||||  |||| |||||| |||||||| || ||    
T  7166691 tgcccattccccatatccctatcatacaaactttgcttggctgagttgcaataaattcaataactttgtgcatgcgagattccaatccaactggaaattc 7166790  T
Q  361 ggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcattcctt 439  Q
    |  ||||||||   |||   ||||||||||||  ||||  ||  ||||||||||||  ||||||||| ||||| |||||    
T  7166791 gataatagacaaggatgcgttgtctagttttgccaaaagatcctcaacaatttgctgcactagttcagcttcactcctt 7166869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 161 - 317
Target Start/End: Original strand, 3269111 - 3269267
Alignment:
Q  161 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 260  Q
    |||||| || ||||||| |||||||||| ||||||   ||  ||||| ||||||||||||   || |||||   | ||||||| ||||||||||| ||||    
T  3269111 ttttcataaacttctctaatattttcaatgaaactgtgatctacaaatttgcgatgaattttgttgtagatatctctggctgttgttgttttacctgatc 3269210  T
Q  261 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 317  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  3269211 cacccataccccagatccctatcatgcaaactttgcttgattgtttttcaataaact 3269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 131 - 350
Target Start/End: Complemental strand, 31174031 - 31173812
Alignment:
Q  131 tgtaaatgaataacccctctataattatcattttcacaagcttctctgatattttcaacgaaactt---ctatgcacaaacttgcgatgaattcgattat 227  Q
    ||||||||||||||||||||| |||||| ||   ||||| ||||||  ||| |||||| |||||||   |||    ||||| | ||||| |||  ||| |    
T  31174031 tgtaaatgaataacccctctagaattattat---cacaaacttctcgaatactttcaaagaaacttgttctaccttcaaacctacgatggattttattgt 31173935  T
Q  228 agatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaacttt 327  Q
    |||| | |||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||| |||| || || |||||||||| || || |||    
T  31173934 agatagctttggctgtggttgttttcccggatccacccattccccatatccctatcatgcagactttgtttgattgattatcaataaacttggtaatttt 31173835  T
Q  328 ttgcacacgaggttccaacccaa 350  Q
    ||||||||| | |||||| ||||    
T  31173834 ttgcacacgggattccaatccaa 31173812  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 3264453 - 3264589
Alignment:
Q  161 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 260  Q
    |||||| || ||||||| |||||||| | ||||||| ||| | |||| |||||||| ||| | || |||| || |||||||||||||||||||||  | |    
T  3264453 ttttcataaacttctctaatattttcgatgaaacttttatcctcaaatttgcgatggatttggttgtagacggctttggctgtggttgttttacccaacc 3264552  T
Q  261 cacccattccccagatccctatcatacaaacattgct 297  Q
    ||||||||||||| || || ||||||||||| |||||    
T  3264553 cacccattccccatattcccatcatacaaactttgct 3264589  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 166 - 317
Target Start/End: Original strand, 3288384 - 3288535
Alignment:
Q  166 acaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccaccc 265  Q
    |||| ||||||| |||||||||| |||||||  ||||| ||| ||   || |||| ||||  |||| | ||||||||| |||||||| || || ||||||    
T  3288384 acaaacttctctaatattttcaatgaaacttgcatgcataaatttcaaattaatttgattgaagatagctttggctgttgttgttttccccgacccaccc 3288483  T
Q  266 attccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 317  Q
    ||||||||||||||| ||| |||||| |||||||| || |||| ||||||||    
T  3288484 attccccagatccctgtcaaacaaactttgcttgattgattttgaataaact 3288535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 435
Target Start/End: Original strand, 3400608 - 3400821
Alignment:
Q  222 gattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggc 321  Q
    |||| ||||| | |||||| ||||||||||| || ||||||||||||||||| |||||||||||||| || |   |||| || |  |||||||||| ||     
T  3400608 gattgtagatagctttggccgtggttgttttcccggatccacccattccccatatccctatcatacagacttctgttgattgatgatcaataaacttggt 3400707  T
Q  322 aactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttact 421  Q
    || || ||||||||| |  ||||| ||||| ||  | || | ||||||||  |||||  | ||||||||||  |||  |||  ||||||||||||| |||    
T  3400708 aatttgttgcacacgggaatccaatccaaccggatattcagtaatagacaacaatgagatatctagttttgccaaagtgtcctcaacaatttgcttcact 3400807  T
Q  422 agttcaccttcatt 435  Q
    ||||||||||||||    
T  3400808 agttcaccttcatt 3400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 13807013 - 13806935
Alignment:
Q  237 tggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaa 315  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||||| |||||||| || |||| ||||||    
T  13807013 tggctgttgttgttttacctgatccacccatcccccagatccctatcaagcaaactttgcttgattgatttttaataaa 13806935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 13785735 - 13785638
Alignment:
Q  217 aattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataa 314  Q
    |||| |||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||| ||    ||||||||| |||| || ||||||||||    
T  13785735 aatttgattgtagatggctttggctgtggttgttttccccgatccacccataccccagatccccatagagcaaacattgtttgattgattttcaataa 13785638  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 3409295 - 3409395
Alignment:
Q  212 cgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaa 311  Q
    |||||||||  ||| ||||||| |||||||   ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||  |||||||| ||||    
T  3409295 cgatgaatttcattgtagatggctttggctacagttgttttacctgatcctcccatgccccagatccctaccatacaaacatcgcccgaatgtttctcaa 3409394  T
Q  312 t 312  Q
    |    
T  3409395 t 3409395  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 30416079 - 30415929
Alignment:
Q  162 tttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatcc 261  Q
    ||||||||| |||||| |||||||| | ||||||||| | |||||| |||||||||||| |||| ||||||| ||||||||  || ||||||||  | ||    
T  30416079 tttcacaagtttctctaatattttcgatgaaacttctgtacacaaatttgcgatgaatttgattgtagatggctttggctgccgtagttttacccaaccc 30415980  T
Q  262 acccattccccagatccctatcatacaaacattgcttgaatgtttttcaat 312  Q
     ||||||||||| || |||||||||||||| ||  ||||||  ||||||||    
T  30415979 tcccattccccatatgcctatcatacaaacctttgttgaattattttcaat 30415929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 438
Target Start/End: Complemental strand, 20836538 - 20836335
Alignment:
Q  235 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 334  Q
    |||||| ||||||||||| ||  |||||||||||||||| |||||||| ||||| || |||| ||| || |  ||||||| || || || || |||||||    
T  20836538 tttggccgtggttgttttgcctaatccacccattccccatatccctatgatacagactttgcatgattgatcatcaataatcttggtaatttgttgcaca 20836439  T
Q  335 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 434  Q
     | | |||||| ||||  || || || | ||||||||  |||||  | ||||||||| | |||| |||  |||||||| |||  ||||||||||||||||    
T  20836438 tgggattccaatccaatcggaaattcagtaatagacaacaatgagatatctagttttctcaaaatgtcctcaacaattagctccactagttcaccttcat 20836339  T
Q  435 tcct 438  Q
    ||||    
T  20836338 tcct 20836335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 438
Target Start/End: Complemental strand, 20810183 - 20809980
Alignment:
Q  235 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 334  Q
    |||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| || || | ||| || |  ||||||| || || || || |||||||    
T  20810183 tttggccgtggttgttttgcctgatccacccattccccatatccctatgatacagactttccatgattgatcatcaataatcttggtaatttgttgcaca 20810084  T
Q  335 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 434  Q
    || | |||||| |||| |||  | || | ||||||||  |||||  | | ||||||||| |||| ||   |||||||   ||| ||||||||||||||||    
T  20810083 cgggattccaatccaattggatattcagtaatagacaacaatgagatatttagttttgtcaaaatgtactcaacaatacccttcactagttcaccttcat 20809984  T
Q  435 tcct 438  Q
    ||||    
T  20809983 tcct 20809980  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 32412883 - 32413020
Alignment:
Q  154 attatcattttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgtttta 253  Q
    |||||| ||||||||   |||||| || ||||||| ||| |||||||   |||| |||||||  ||| |||||||||||| ||| |||||||||||||||    
T  32412883 attatccttttcacagatttctctaatgttttcaatgaagcttctatctgcaaatttgcgattgatttgattatagatggcttttgctgtggttgtttta 32412982  T
Q  254 ccagatccacccattccccagatccctatcatacaaac 291  Q
    || ||||| ||||||||||| ||||||||||| |||||    
T  32412983 cctgatccccccattccccaaatccctatcatgcaaac 32413020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 6907789 - 6907891
Alignment:
Q  179 atattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatcc 278  Q
    ||||| |||| |||||||||||||||||| ||||||||||||  ||| ||||||  |||||||||||| ||||||||  | || ||||||||||| ||||    
T  6907789 atattctcaatgaaacttctatgcacaaatttgcgatgaattttattgtagatgcctttggctgtggtagttttacccaacccgcccattccccaaatcc 6907888  T
Q  279 cta 281  Q
    |||    
T  6907889 cta 6907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 8209 - 8316
Alignment:
Q  193 acttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaaca 292  Q
    ||||||||||||||||||| ||||||||  ||| ||||    ||||||| |||| ||||||||  | || ||||| ||||||||||||| |||  ||||     
T  8209 acttctatgcacaaacttgtgatgaattttattgtagacacctttggctatggtagttttacccaacccgcccatgccccagatccctaccatggaaact 8308  T
Q  293 ttgcttga 300  Q
    ||||||||    
T  8309 ttgcttga 8316  T

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