View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_32 (Length: 226)
Name: NF1926_low_32
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 28825503 - 28825285
Alignment:
| Q |
8 |
gcccatcacttattctccattttgtaacatttcttgtaattattcagccactaaacaatcatggttgatgccattttattttctaggagttacactatgt |
107 |
Q |
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| T |
28825503 |
gcccatcacttattctccattttgtaacatttcttgtaattattcagccactaaacaatcatggttgatgtcattttattttctaggagttacactatgt |
28825404 |
T |
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| Q |
108 |
ttaaatcagaatcaaatgtcattcctatataagggggcgtctaactcacataagaaataaagaattttgctaaatttttacactttgtgtaatctgagag |
207 |
Q |
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| T |
28825403 |
ttaaatcagaatcaaatgtcattcctatataagggggcgtctaactcacataagaaataaagaattttgctaaatttttacactttgtgtaatatgagag |
28825304 |
T |
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| Q |
208 |
tattttttcttgggttcta |
226 |
Q |
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| T |
28825303 |
tattttttcttgggttcta |
28825285 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 7269472 - 7269404
Alignment:
| Q |
121 |
aaatgtcattcctatataagggggcgtctaactcacataagaaataaagaattttgctaaatttttacac |
190 |
Q |
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| T |
7269472 |
aaatgtcattcctatataaggggg-gtgtaactcacatgaaaaatagaaaattttgctaaatttttacac |
7269404 |
T |
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