View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_6 (Length: 544)
Name: NF1926_low_6
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 7837535 - 7837257
Alignment:
| Q |
19 |
gtgaaattctttgagatgaagaagatggtgttggaagattaaggtgaccgttgttgttgctatgatgataattaggaacatgctgaaaatgttgttgagg |
118 |
Q |
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| T |
7837535 |
gtgaaactctttgagatgaagaagatggtgttggaagattaaggtgaccgttgttgttgctatgatgataattaggaacatgctgaacatgttgttgagg |
7837436 |
T |
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| Q |
119 |
aatactatgttgttgttggacatgttttcgatggaaattacggtgacaatcacaagcagcacatttgaagtattgtggggtaccttcttcaccgcttggc |
218 |
Q |
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| T |
7837435 |
aatactatgttgttgttggacatgttttcgatggaaattacggtgacaatcacaagcagcacatttgaagtattgtggggtaccttcttcaccgcttggc |
7837336 |
T |
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| Q |
219 |
atgaattcaccacatccatctaccacgtggcttcccatgcttgccgcgtggtttctcagacattctcggtaacatattt |
297 |
Q |
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| T |
7837335 |
atgaattcaccacatccatctaccacgtggcttcccatgcttgccgcgtggtttctcagacattctcggtaacatattt |
7837257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 367 - 503
Target Start/End: Complemental strand, 7837187 - 7837051
Alignment:
| Q |
367 |
cagccgttagatctggatctatgataggtctttgagaagaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaatt |
466 |
Q |
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| T |
7837187 |
cagccgttagatctggatctatgataggtctttgagaagaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaatt |
7837088 |
T |
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| Q |
467 |
ttgaggtgggttattgaagactaatgtgtgaacttga |
503 |
Q |
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| T |
7837087 |
ttgaggtgggttattgaagactaatgtgtgaacttga |
7837051 |
T |
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