View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_7 (Length: 504)
Name: NF1926_low_7
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 7027635 - 7027156
Alignment:
| Q |
18 |
aacatgtgctatcttcgatgtcttccggaagatttcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatc |
117 |
Q |
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| T |
7027635 |
aacatgtgctatcttcgatgtcttccggaagatttcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatc |
7027536 |
T |
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| Q |
118 |
cagaaagacctcaaagctaacatcatccgtaaagataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaactataccagt |
217 |
Q |
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| T |
7027535 |
cagaaagacctcaaagctaacatcatccgtaaagataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacgatttaactatactagt |
7027436 |
T |
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| Q |
218 |
agaagttgagcctgcacattatacacgaacgccaaacatgtcgaagtctatgaaggtaaggtaacttgggatctatggcgatcacaaacaacaagataag |
317 |
Q |
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| T |
7027435 |
agaagttgagcctgcacattatacacgaacgccaaacatgtcaaagtctatgaaggtgaggtaacttgggatctatggcgatcacaaacaacaagataag |
7027336 |
T |
|
| Q |
318 |
gcacagtaaaatctctctttgattaataaatatgcatcatcatgaggatctcgt---aactgagatatttgactcaaattaactgaactgacagtgtgaa |
414 |
Q |
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| T |
7027335 |
gcacagtaaaatctctctttgattaataaatatgcatcatcatgaggatctcgtagcaactgagatatttgactcaaattaactgaactgacagtgtgaa |
7027236 |
T |
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| Q |
415 |
gataagatcatttgtaaagttgtcaattgccgatggccaaaactccgtcatataaacgtggaactttgacctatgctact |
494 |
Q |
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| T |
7027235 |
gataagatcatatgtaaagttgtcaattgccgatggccaaaactccgtcatataaacgtggaactttgacctatggtact |
7027156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 2977458 - 2977308
Alignment:
| Q |
109 |
taaatgatccagaaagacctcaaagctaacatcatccgtaaagataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaac |
208 |
Q |
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||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||| || |||||||||||||| ||||||| |
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| T |
2977458 |
taaatgatcaaggaagacgtcaaagctaacatcatccgtaaagataatgtcccctccagggagtgaagcttcggtgttatatgttgcagaaggatttaac |
2977359 |
T |
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| Q |
209 |
tataccagtagaagttgagcctgcacattatacacgaacgccaaacatgtc |
259 |
Q |
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| T |
2977358 |
tttgctagaagaaatcgagcctgcacaatgtgcatgaatgccaaacatgtc |
2977308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 2977247 - 2977160
Alignment:
| Q |
284 |
tgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaatatgcatcatcatgaggatctcgta |
372 |
Q |
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||||||| ||| ||||||||||||| || |||||||| ||| ||||||||| |||| ||||| || ||||||||||||| |||||| |
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| T |
2977247 |
tgggatccatgctgatcacaaacaaccaggcgaggcacaggaaa-tctctctttcattattaaatctgaatcatcatgaggagctcgta |
2977160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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