View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_8 (Length: 485)
Name: NF1926_low_8
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 37504317 - 37503858
Alignment:
| Q |
18 |
gatgataatgatggtgatgagagggttattgttgatcatcccatatggtttatccgtactgtagggcttcaacgatcggtgatagattccattacagtct |
117 |
Q |
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| T |
37504317 |
gatgataatgatggtgatgagagggttattgttgatcatcccatatggttcatccgtacggtagggcttcaacgatcggtgatagattccattacagtct |
37504218 |
T |
|
| Q |
118 |
tcaaatacggaaaagacgaaggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtg |
217 |
Q |
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| T |
37504217 |
tcaaatacagaaaagacgaaggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtg |
37504118 |
T |
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| Q |
218 |
tagccacgcttttcatatcccttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcgtgcacctgtgatcaatgatgctgcagaggtg |
317 |
Q |
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| T |
37504117 |
tagccacgcttttcatatcccttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcgtgcacctgttatcaatgatgctgcagaggtg |
37504018 |
T |
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| Q |
318 |
agtatcacagtcactgatcaacttgattcaatttcaaatatttctgttgagactcagaatcaaggacatacagaaagctctgataatgctgttgggagag |
417 |
Q |
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| T |
37504017 |
agtatcacagtcactgatcaacttgattcaatttcaaatatttctggtgacactcagaatcaaggacatacagaaagctctgataatgctgttgggagag |
37503918 |
T |
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| Q |
418 |
gattagggtcacataatgtaggagagtttgatattattattagagtagataatgatgatg |
477 |
Q |
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| T |
37503917 |
gattagggtcacataatgtaggagagtttgatattattattagagtagataatgatgatg |
37503858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 27771725 - 27771620
Alignment:
| Q |
153 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
252 |
Q |
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||||| ||||| ||||||||| |||| |||||||| || || ||| | ||| |||| || | ||||| ||| | ||||||| | |||||||||||||| | |
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| T |
27771725 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
27771626 |
T |
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| Q |
253 |
ggctta |
258 |
Q |
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|||||| |
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| T |
27771625 |
ggctta |
27771620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 37227974 - 37227852
Alignment:
| Q |
145 |
ttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtat |
244 |
Q |
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||||||| |||| |||||||||||| | |||| ||| |||| || |||| ||| ||| ||||||| ||||||| ||| ||||||||| | |||||||| |
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| T |
37227974 |
ttgatggatcagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtat |
37227875 |
T |
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| Q |
245 |
tgatacttggcttagttcacaca |
267 |
Q |
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| T |
37227874 |
tgatacttggcttagatcacaca |
37227852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 12617931 - 12617819
Alignment:
| Q |
144 |
gttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgta |
243 |
Q |
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||||||| ||||| ||||||||||||||| || |||||||| || |||||| | ||| |||| ||||| |||||||| ||||||||| | ||||||| |
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| T |
12617931 |
gttgatgtaacagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgta |
12617832 |
T |
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| Q |
244 |
ttgatacttggct |
256 |
Q |
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| T |
12617831 |
ttgatacatggct |
12617819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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