View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1926_low_9 (Length: 440)
Name: NF1926_low_9
Description: NF1926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1926_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 48493131 - 48492718
Alignment:
| Q |
16 |
aaaaccatgtgtgttcagatattggcattcttcttgagaccaaatagggattccaagtttcgcaaaatgtggaatttgtaccacagttggtttggaagga |
115 |
Q |
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| T |
48493131 |
aaaaccatgtgtgttcagatattggcattcttcttgagaccaaatagggattccaagtttcgcaaaatgtggaatttgtaccacagttggtttggaagga |
48493032 |
T |
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| Q |
116 |
tggcactattctttgcagccttgaacatagtattgggaatgcaagctgcaggagcaacgaatgcttggaagacaagctatggattccttgctggtattat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48493031 |
tggcactattctttgcagccttgaacatagtattgggaatgcaagctgcaggagcaacgaatgcttggaagacaagctatggattccttgctggtattat |
48492932 |
T |
|
| Q |
216 |
aattgttgtagttatcgttctcgaaatattggcatatttaaaaaggtcagagaaacgttctcttcctccaaatttccaaatggaccctcttggagaagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48492931 |
aattgttgtagttatcgttctcgaaatattggcatatttaaaaaggtcagagaaacgttctcttcctccaaatttccaaatggaccctcttggagaagaa |
48492832 |
T |
|
| Q |
316 |
atctttccaagaaataatcaaacaaaaggtacattctttcctttgctttatacaactttctttgtttaagttgttttgtgtaacattgtatctaacaaca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48492831 |
atctttccaagaaataatcaaacaaaaggtacattctttcctttgctttatacaactttctttgtttaagttgttttgtgtaacattgtatctaataaca |
48492732 |
T |
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| Q |
416 |
ccatcttgatgatg |
429 |
Q |
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| T |
48492731 |
ccatcttgatgatg |
48492718 |
T |
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