View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_high_1 (Length: 652)

Name: NF19270_high_1
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_high_1
NF19270_high_1
[»] chr2 (6 HSPs)
chr2 (19-536)||(24563621-24564138)
chr2 (544-639)||(24564203-24564298)
chr2 (557-625)||(27942226-27942294)
chr2 (557-624)||(26022118-26022185)
chr2 (544-622)||(19520660-19520738)
chr2 (581-637)||(32690745-32690802)
[»] chr1 (2 HSPs)
chr1 (543-639)||(45836250-45836347)
chr1 (567-624)||(41502394-41502451)
[»] chr3 (3 HSPs)
chr3 (557-625)||(37268690-37268758)
chr3 (567-624)||(13297831-13297888)
chr3 (557-625)||(32649100-32649168)
[»] chr5 (2 HSPs)
chr5 (557-624)||(34305011-34305078)
chr5 (560-639)||(20428253-20428332)
[»] chr7 (2 HSPs)
chr7 (552-624)||(28287377-28287449)
chr7 (557-624)||(2791887-2791954)
[»] chr6 (1 HSPs)
chr6 (557-637)||(21104306-21104387)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 24563621 - 24564138
Alignment:
Q  19 ctcataacatcaagttcaaccaatgatcaagtacatgtggtacagcatggagactcggtgatgctaaaccatcagcagttcccaaatgaatttggatcgt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  24563621 ctcataatatcaagttcaaccaatgatcaagtacatgtggtacagcatggagactcggtgatgctcaaccatcagcagttctcaaatgaatttggatcgt 24563720  T
Q  119 tggattgggaaggtggtgctaacaccgttgatcagtcttactggacacactctcattggtctgattatgtcaatcattcatcctttctttatcatcttcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||| |||||||||    
T  24563721 tggattgggaaggtggtgctaacaccgttgatcagtcttactggacacagtctcattggtctgatcatgtgattcattcatcctctctttttcatcttcc 24563820  T
Q  219 ctgaaaaacgaataagcctcaacaaatttctacacttannnnnnnnnnnnnnnnnctagcagttaatgttttgtttctagttggaatcaagacaaaacaa 318  Q
     ||||||| |||||||||||||||||||||||||||||                 ||| |||||| ||||||||||||||||||||||||||||||||||    
T  24563821 atgaaaaatgaataagcctcaacaaatttctacacttatttttattttttgttttctaccagttattgttttgtttctagttggaatcaagacaaaacaa 24563920  T
Q  319 atgttttattttaacagaatgtgaaagaaagcgtgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttg 418  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24563921 atgttttattttaacagaatgtgaaagacagcatgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttg 24564020  T
Q  419 tttatttgtgtgttgattgtgattgatcttaagattgaggttgcttgtgcaataaacgtatcaatgttgctttctttaagattctcttataattatttct 518  Q
    ||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  24564021 tttgtttgtttgttgattgtgattgatcttaaggttgaggttgtttgtgcaataaatgtatcaatgttgctttctttaagattcttttataattatttct 24564120  T
Q  519 acgcattttattattatt 536  Q
    ||||||||||||||||||    
T  24564121 acgcattttattattatt 24564138  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 544 - 639
Target Start/End: Original strand, 24564203 - 24564298
Alignment:
Q  544 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccgtggctgcaccct 639  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||| ||||||    
T  24564203 gagtataccagacaaggttaaactgttatctttttagtggctaaaagtaagtatgttgacttttgtttttagttatcatgaccgtggctacaccct 24564298  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 557 - 625
Target Start/End: Complemental strand, 27942294 - 27942226
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 625  Q
    |||||||||||| |||||||  | |||||||||||||||||| |||||||| ||||||||||| |||||    
T  27942294 aaggttaaactgatatctttccaatggctaaaaacaaatatgctaacttttatttttagttattatgac 27942226  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 557 - 624
Target Start/End: Complemental strand, 26022185 - 26022118
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  ||||||||||||||||||||||||    
T  26022185 aaggttaaactgctatctttacaatggctaaaagcaaatatgcaaacttttgtttttagttatcatga 26022118  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 622
Target Start/End: Complemental strand, 19520738 - 19520660
Alignment:
Q  544 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcat 622  Q
    ||||||| |||| ||||||||| ||||||||||| ||||| ||||| |||||||||| | ||| |||||||| ||||||    
T  19520738 gagtatagcagagaaggttaaattgttatcttttcagtggttaaaagcaaatatgtttagtttagtttttagctatcat 19520660  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 637
Target Start/End: Original strand, 32690745 - 32690802
Alignment:
Q  581 tggctaaaaacaaatatgttaacttttgtttttagttatcatgacc-gtggctgcacc 637  Q
    ||||||||| ||||| ||  ||| |||||||||||||||||||||| |||||||||||    
T  32690745 tggctaaaagcaaatttgcaaacctttgtttttagttatcatgaccagtggctgcacc 32690802  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 543 - 639
Target Start/End: Complemental strand, 45836347 - 45836250
Alignment:
Q  543 agagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccg-tggctgcaccct 639  Q
    |||||||| |||| ||||||||||||||||||||  ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  45836347 agagtatagcagaaaaggttaaactgttatctttccagtggctgaaagcaaatttgttaacttttgtttttagttatcatgaccgatggctgcaccct 45836250  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 624
Target Start/End: Complemental strand, 41502451 - 41502394
Alignment:
Q  567 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    ||||||| ||| ||||||||||  |||||||| | |||||||||||||| ||||||||    
T  41502451 tgttatcatttcagtggctaaaggcaaatatgcttacttttgtttttagctatcatga 41502394  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 557 - 625
Target Start/End: Original strand, 37268690 - 37268758
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 625  Q
    ||||||||||||||||||||  ||||| ||||  |||||||||| |||||||||||||| |||||||||    
T  37268690 aaggttaaactgttatctttccagtggttaaaggcaaatatgtttacttttgtttttagctatcatgac 37268758  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 624
Target Start/End: Complemental strand, 13297888 - 13297831
Alignment:
Q  567 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  13297888 tgttatcgttttagtggctaaagacaaatatgcttacttttgtttttagctatcatga 13297831  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 625
Target Start/End: Original strand, 32649100 - 32649168
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 625  Q
    |||||||||||||||||||| || ||| ||||  |||||| ||| || ||| ||||||| |||||||||    
T  32649100 aaggttaaactgttatctttctattggttaaacgcaaatacgttcacgtttatttttagctatcatgac 32649168  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 557 - 624
Target Start/End: Complemental strand, 34305078 - 34305011
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  |||||| |||||||||||||||||    
T  34305078 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaactttcgtttttagttatcatga 34305011  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 639
Target Start/End: Original strand, 20428253 - 20428332
Alignment:
Q  560 gttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccct 639  Q
    ||||||||| |||||||  | ||||||||| ||||||||  | ||||| |||||||||||||||||  |||||||||||||    
T  20428253 gttaaactgctatctttccaatggctaaaagcaaatatgcaatctttt-tttttagttatcatgactggtggctgcaccct 20428332  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 624
Target Start/End: Original strand, 28287377 - 28287449
Alignment:
Q  552 cagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    |||| ||||||||| ||||||||||| | ||||||||| |||||||| | || ||| ||||||| ||||||||    
T  28287377 cagagaaggttaaattgttatcttttcattggctaaaagcaaatatggttacctttatttttagctatcatga 28287449  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 557 - 624
Target Start/End: Original strand, 2791887 - 2791954
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 624  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  || |||||||||| ||||||||||    
T  2791887 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaatttttgtttttggttatcatga 2791954  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 637
Target Start/End: Complemental strand, 21104387 - 21104306
Alignment:
Q  557 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcacc 637  Q
    ||||||||| || |||||||  | ||||||||| |||||| |  ||| |||||||||||||||||||||  |||||||||||    
T  21104387 aaggttaaaatgctatctttccaatggctaaaagcaaataagcaaacctttgtttttagttatcatgactggtggctgcacc 21104306  T

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