View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_11 (Length: 376)
Name: NF19270_high_11
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 13161326 - 13160969
Alignment:
| Q |
19 |
ttccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaatcactcaaatcttgaaaa |
118 |
Q |
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| T |
13161326 |
ttccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaatcactcaaatcttgaaaa |
13161227 |
T |
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| Q |
119 |
ccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccattgacaatttccccatttctttctccaccaaatccaaatgggta |
218 |
Q |
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| T |
13161226 |
ccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccattgacaatttccccatttctttctccaccaaatccaaatgggta |
13161127 |
T |
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| Q |
219 |
tttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaaatataagtttctgtagcc |
318 |
Q |
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| T |
13161126 |
tttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaaatataagtttctgtagcc |
13161027 |
T |
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| Q |
319 |
caaggccttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatac |
376 |
Q |
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| T |
13161026 |
caaggccttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatac |
13160969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 13152097 - 13152185
Alignment:
| Q |
204 |
aaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
292 |
Q |
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| T |
13152097 |
aaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca |
13152185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 13145358 - 13145421
Alignment:
| Q |
229 |
ttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
292 |
Q |
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| T |
13145358 |
ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaaca |
13145421 |
T |
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