View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19270_high_2 (Length: 505)
Name: NF19270_high_2
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 139 - 419
Target Start/End: Complemental strand, 4521204 - 4520929
Alignment:
| Q |
139 |
ttgaggttttacttataatcttggtcgagccacatcggttttagctgagattttagggtcatgcatggcttcccctaatggcaagcaggtccgatcctaa |
238 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4521204 |
ttgatgttttacttataatcttggtcgggccacatcggttttagctgaggttttagggtgatgcgtggcttcgcctaatggcgagcaggtccgatcctaa |
4521105 |
T |
|
| Q |
239 |
gacttgtggggtcttgggcggccgcccttcttgcccaggctcagaaccacacctcatcgcgagtactaatggcgtggactggagggtgaaggagttgatt |
338 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4521104 |
gacttttggggtcttgggcagctgcccttcttgcccatgctcagaaccacacctcatcgcgggtactaatggc-----atggagggtgaaggagttgatt |
4521010 |
T |
|
| Q |
339 |
cgtcatctcactcaattgttgcttattcttgatgtagatatttgagggacaagattttctcattaattcattagtttttct |
419 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4521009 |
cgtcatctctctcaattgtagcttattcttgatgtagatattcgagggacaagattttctgattaattcattagtttttct |
4520929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 4521554 - 4521435
Alignment:
| Q |
18 |
cctaagacaattatgcattgcttgagggattctgaaatgattaataatatcttggagaagtttataaatatggagacaaccattgagcaccttttttagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4521554 |
cctaagacaattatgcattgcttgagggattctgaaatgattaataatatcttggagaagtttataaatatggagacaaccattgagcaccttttttagt |
4521455 |
T |
|
| Q |
118 |
attggtcttcttcaatattg |
137 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
4521454 |
attggttttcttcaatattg |
4521435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University