View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19270_high_21 (Length: 312)
Name: NF19270_high_21
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_21 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 45 - 310
Target Start/End: Original strand, 43894745 - 43895010
Alignment:
| Q |
45 |
tactaaaatttaaaattcgctgcaacattgcccgtgttctatttaggtgcaccagtatcaactccctaaacagttgcaaaatcacaaatatttgatattt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894745 |
tactaaaatttaaaattcgctgcaacattgcccgtgttctatttaggtgcaccagtatcaactccctaaacagttgcaaaatcacaaatatttgatattt |
43894844 |
T |
|
| Q |
145 |
ccctctaagattaccttcattcaccaaataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894845 |
ccctctaagattaccttcattcaccaaataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatga |
43894944 |
T |
|
| Q |
245 |
gtggttaccaagtaagtagttttgtcaattgcagatcactgaaaataacggtttgttttaattccg |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43894945 |
gtggttaccaagcaagtagttttgtcaattgcagatcactgaaaataacggtttgtttgaattccg |
43895010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 45 - 312
Target Start/End: Original strand, 44305174 - 44305441
Alignment:
| Q |
45 |
tactaaaatttaaaattcgctgcaacattgcccgtgttctatttaggtgcaccagtatcaactccctaaacagttgcaaaatcacaaatatttgatattt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44305174 |
tactaaaatttaaaattcgctgcaacattgcccatgttctatttaggtgcaccagtatcaactccctaaacagttgcaaaatcacaaatatttgatattt |
44305273 |
T |
|
| Q |
145 |
ccctctaagattaccttcattcaccaaataatgataaaagcccagatcatgcatatattttcagattaaaacaaaaactatccgatattgaaaacaatga |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44305274 |
ccctctaagattaccttcattcatcaaataatgataaaagcccagatcatgcatatatttttagattaaaacaaaaactatccgatattgaaaacaatga |
44305373 |
T |
|
| Q |
245 |
gtggttaccaagtaagtagttttgtcaattgcagatcactgaaaataacggtttgttttaattccgct |
312 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44305374 |
gtggtgaccaagcaagtagtcttgtcaattgcagatcactgaaaataacggtttgtttgaattccgct |
44305441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 111 - 298
Target Start/End: Original strand, 44296170 - 44296357
Alignment:
| Q |
111 |
taaacagttgcaaaatcacaaatatttgatatttccctctaagattaccttcattcaccaaataatgataaaagcccagatcatgcatatattttcagat |
210 |
Q |
| |
|
|||| |||||||||||| || | |||| ||| || ||||||| |||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
44296170 |
taaagagttgcaaaatctcacacatttaatactttcctctaacattaccttcattcatcaaattatgataaaagcccagattatggatatattttcagat |
44296269 |
T |
|
| Q |
211 |
taaaacaaaaactatccgatattgaaaacaatgagtggttaccaagtaagtagttttgtcaattgcagatcactgaaaataacggttt |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
44296270 |
aaaaacaaaaacaatccgatattgaaaacaatgagtggttaccacgtgagtagtgttgtcaattgcaaatcaaggagaataacggttt |
44296357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 10156606 - 10156652
Alignment:
| Q |
266 |
ttgtcaattgcagatcactgaaaataacggtttgttttaattccgct |
312 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| |||| |
|
|
| T |
10156606 |
ttgtcaattgcagatcaccgaaaatagcggtttgtttgaatttcgct |
10156652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 23832252 - 23832214
Alignment:
| Q |
261 |
tagttttgtcaattgcagatcactgaaaataacggtttg |
299 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
23832252 |
tagtgttgtcaattgcagatcacggaaaataacggtttg |
23832214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University