View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_high_23 (Length: 309)

Name: NF19270_high_23
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_high_23
NF19270_high_23
[»] chr3 (1 HSPs)
chr3 (1-291)||(39751033-39751328)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 39751033 - 39751328
Alignment:
Q  1 actaattgatttcatgtttcaatttagagcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagctacttttttaaaatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751033 actaattgatttcatgtttcaatttagagcataggatatgcaacattggcaaaccttgctcctcaatatggactttgtaagctacttttttaaaatatat 39751132  T
Q  101 gtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaattacattatcaattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751133 gtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcgcaaaaataaaattacattatcaattaatt 39751232  T
Q  201 ataactatatgatcataatcaatttgtgcgg-----aatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacat 291  Q
    |||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39751233 ataactatatgatcataatcaatttgtgcggaatgaaatgaaatgaaatagatacgagtgttgtaccaccgcttatatacgctgtaatgggaacat 39751328  T

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