View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_29 (Length: 262)
Name: NF19270_high_29
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5841583 - 5841826
Alignment:
| Q |
1 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5841583 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttca |
5841682 |
T |
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| Q |
101 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841683 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
5841782 |
T |
|
| Q |
201 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841783 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
5841826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5847737 - 5847980
Alignment:
| Q |
1 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5847737 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttca |
5847836 |
T |
|
| Q |
101 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5847837 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
5847936 |
T |
|
| Q |
201 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5847937 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
5847980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5848293 - 5848536
Alignment:
| Q |
1 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5848293 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttca |
5848392 |
T |
|
| Q |
101 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848393 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
5848492 |
T |
|
| Q |
201 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848493 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
5848536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5885902 - 5886145
Alignment:
| Q |
1 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttca |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||| ||||||| ||||| |
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| T |
5885902 |
ttcatgtttcttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttca |
5886001 |
T |
|
| Q |
101 |
accaagtgatgatcatgacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
5886002 |
accaagtgatgatcatgacattgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttggctggtatcacttggattttctttaa |
5886101 |
T |
|
| Q |
201 |
ttctattgatatgaagagccacacactctaatgaccatgtatct |
244 |
Q |
| |
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||| ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
5886102 |
ttcgattgatatgaagagccacacaatctaatgaccatggatct |
5886145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 5842004 - 5842131
Alignment:
| Q |
5 |
tgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttcaa |
101 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||| ||| | ||||||||||||||||||| |||| ||||| ||| || |||| ||||| |
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| T |
5842004 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaat---ggcttcatgttcaa |
5842100 |
T |
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| Q |
102 |
ccaagtgatgatcatgacattgatcatattg |
132 |
Q |
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|||||| |||||||||| ||||||||||||| |
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| T |
5842101 |
ccaagttatgatcatgatattgatcatattg |
5842131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 5848714 - 5848841
Alignment:
| Q |
5 |
tgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgaaaaattgaggcaaaatattgggttcagtttcaa |
101 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||| ||| | ||||||||||||||||||| |||| ||||| ||| || |||| ||||| |
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| T |
5848714 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaat---ggcttcatgttcaa |
5848810 |
T |
|
| Q |
102 |
ccaagtgatgatcatgacattgatcatattg |
132 |
Q |
| |
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|||||| |||||||||| ||||||||||||| |
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| T |
5848811 |
ccaagttatgatcatgatattgatcatattg |
5848841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5886324 - 5886392
Alignment:
| Q |
3 |
catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattga |
68 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
5886324 |
catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattga |
5886392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5958751 - 5958812
Alignment:
| Q |
1 |
ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgat |
62 |
Q |
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||||||||| | ||||| | ||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
5958751 |
ttcatgttcttgggaattagatgaatctaggatgctacaagcataatcctcaaggctttgat |
5958812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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