View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_34 (Length: 250)
Name: NF19270_high_34
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20053271 - 20053514
Alignment:
| Q |
1 |
gttaaaataagatatgagaaaaagaaatattaaacacaatatttatttagaaactcttcgacagataacagaaaaaaccatagagtaagagtagaagaaa |
100 |
Q |
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| T |
20053271 |
gttaaaataagatatgagaaaaagaaatattaaacacaatatttatttagaaactcttcaacagataacagaaaaaaccatagagtaagagtagaagaaa |
20053370 |
T |
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| Q |
101 |
tttcacttagtggaacaaattatttcatttgtgcatgtactgaaggagcttccaacaatacattctggcgagcatcttgacaactgagcactttcttcat |
200 |
Q |
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| T |
20053371 |
tttcacttagtggaacaaattatttcatttgtgcatgtactgaaggagcttccaacaatacattctggcgagcatcttgataactgagcactttcttcat |
20053470 |
T |
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| Q |
201 |
cattcttgaatgattatccggaaacttgctgggattcatttcac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20053471 |
cattcttgaatgattatccggaaacttgctgggattcatttcac |
20053514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20053159 - 20053208
Alignment:
| Q |
1 |
gttaaaataagatatgagaaaaagaaatattaa--acacaatatttattt |
48 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
20053159 |
gttaaaataagatatgaaaaaaagaaatattaaacacacaatatttattt |
20053208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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