View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_42 (Length: 230)
Name: NF19270_high_42
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27436039 - 27436253
Alignment:
| Q |
1 |
tttcctgttcatctctctcgacttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaa |
100 |
Q |
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| T |
27436039 |
tttcctgttcttctctgtcgacttggcattctcgatgccgaaggatagagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaa |
27436138 |
T |
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| Q |
101 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27436139 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaaga |
27436238 |
T |
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| Q |
201 |
gacatgggataatgg |
215 |
Q |
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||||||||||||||| |
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| T |
27436239 |
gacatgggataatgg |
27436253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27944531 - 27944745
Alignment:
| Q |
1 |
tttcctgttcatctctctcgacttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaa |
100 |
Q |
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|||||||||| | ||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27944531 |
tttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaa |
27944630 |
T |
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| Q |
101 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaaga |
200 |
Q |
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| T |
27944631 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaaga |
27944730 |
T |
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| Q |
201 |
gacatgggataatgg |
215 |
Q |
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||||||||||||||| |
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| T |
27944731 |
gacatgggataatgg |
27944745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27550197 - 27549983
Alignment:
| Q |
1 |
tttcctgttcatctctctcgacttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaa |
100 |
Q |
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|||||||||| | ||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
27550197 |
tttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagcatcaa |
27550098 |
T |
|
| Q |
101 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27550097 |
tttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaaga |
27549998 |
T |
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| Q |
201 |
gacatgggataatgg |
215 |
Q |
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|||||| |||||||| |
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| T |
27549997 |
gacatgtgataatgg |
27549983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 26764904 - 26764984
Alignment:
| Q |
121 |
gtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagag |
201 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||| || ||||||||||||| |
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| T |
26764904 |
gtttgggaaggtttattcttccaaggatgaacatgattacaggtttaaaatcttcaagtctaatctgaaccgtgctaagag |
26764984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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