View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_45 (Length: 223)
Name: NF19270_high_45
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_45 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 48882784 - 48882965
Alignment:
| Q |
27 |
taacaattttgatgtcaaaaatcatttcttgttaacacaaccatcaaataggaactaaaaatttcaaatcatactaacccacatttcaaaatgaacatta |
126 |
Q |
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| T |
48882784 |
taacaattttgatgtcaaaaatcatttcttgttaacaaaaccatcaaataggaactaaaaatttcaaatcatactaacccacatttcaaaatgaacatta |
48882883 |
T |
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| Q |
127 |
aaatacaacttgtaatttacacacacatgcagtttgcgttatttgaacaccaaaaaacaagcacacgctatgtgtttatttt |
208 |
Q |
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| T |
48882884 |
aaatacaccttgtaattaacacacacatgcagtttgcgttatttgaacaccaaaaaacaagcacacactatgtgtttatttt |
48882965 |
T |
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Target: scaffold0189 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 30882 - 30693
Alignment:
| Q |
15 |
caaaggacactgtaacaattttgatgtcaaaaatcatttcttgttaacaca--accatcaaataggaactaaaaatttcaaatcatactaacccacattt |
112 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||| ||| |
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| T |
30882 |
caaaggacaccgtagtgattttaatgtcaaaaatcatttcttgttaacacataaccatcaaa-aggaaacacaaatttcaaatcatactaacccactttt |
30784 |
T |
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| Q |
113 |
caaaatgaacattaaaatacaacttgtaatttacacacacatgcagtttgcgttatttgaacaccaaaaaacaagcacacgctatgtgtttattt |
207 |
Q |
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| T |
30783 |
caaaatgaacatcaaaatac-acctgtaatt--aacacacatgcag-ttgtgttatttgaactataaaatacaaacaccacctatgtgtttattt |
30693 |
T |
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