View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_high_51 (Length: 205)
Name: NF19270_high_51
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 5576330 - 5576522
Alignment:
| Q |
1 |
cagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgc |
100 |
Q |
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| T |
5576330 |
cagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgc |
5576429 |
T |
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| Q |
101 |
aataaaaagaactttacagtttgagctgaatcaaaagattaatgtaacaagagaaaagaataatgaaaaacacttatagattcaatcagtata |
193 |
Q |
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| T |
5576430 |
aataaaaagaactttacagtttgagctgaatcaaaagattaatgtaacaagagaaaagaataatgaaaaacacttatagattcaatcagtata |
5576522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5586751 - 5586925
Alignment:
| Q |
1 |
cagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgc |
100 |
Q |
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| T |
5586751 |
cagctgcgccagatgcgtagttcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaagttctcaaagccaagaagctgagctac |
5586850 |
T |
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| Q |
101 |
aataaaaagaactttacagtttgagctgaatcaaaagattaatgtaacaagagaaaagaataatgaaaaacactt |
175 |
Q |
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| T |
5586851 |
aatcaaaataactttatagtttgagctgaatcaaaagtttaaggtaacaagagaaaagaacaaagaaaaacactt |
5586925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 5592995 - 5593158
Alignment:
| Q |
9 |
ccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgcaataaaaa |
108 |
Q |
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| T |
5592995 |
ccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaagtaactgagctgcaat---aa |
5593091 |
T |
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| Q |
109 |
gaactttacagtttgagctgaatcaaaagattaatgtaacaagagaaaagaataatgaaaaacactt |
175 |
Q |
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| T |
5593092 |
gaagttcatagtttaagctgaatcaaaagtttaaggtaacaagagaaaagaacaaagaaaaacactt |
5593158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5582500 - 5582674
Alignment:
| Q |
1 |
cagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgc |
100 |
Q |
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| T |
5582500 |
cagctccacgagatgcatagttcacaccttagagtatgtctgaaccactaatgtttgcaaatggtagaatgaagttctcaaaa-caagaagctgagctgc |
5582598 |
T |
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| Q |
101 |
aat-aaaaagaactttacagtttgagctgaatcaaaagattaatgtaacaagagaaaagaataatgaaaaacactta |
176 |
Q |
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| T |
5582599 |
aataaaaaataactttatagtttgagctgaatcaaaagcttaa-ataagaagagaaaagaacaatgaaaaacactta |
5582674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 5573258 - 5573363
Alignment:
| Q |
9 |
ccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgcaataaaaa |
108 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |||| |
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| T |
5573258 |
ccagatgcatagttcacacctttgagtatgtctgaaccactgatgtttgcaaatggtggaatgaaattctcaaatccaagaagttgagctgcaatcaaaa |
5573357 |
T |
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| Q |
109 |
gaactt |
114 |
Q |
| |
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| |||| |
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| T |
5573358 |
ggactt |
5573363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5558834 - 5558911
Alignment:
| Q |
1 |
cagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttct |
78 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||| |||||||||| |
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| T |
5558834 |
cagctgcaccagatgcatagttaacacctttaagtatatctgaaccaatagtgtttgcaaagggtgggatgaatttct |
5558911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 12059528 - 12059437
Alignment:
| Q |
12 |
gatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgcaat |
103 |
Q |
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| T |
12059528 |
gatgcatagttcacatctctgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaacaaggtgagctgcaat |
12059437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 12064898 - 12064819
Alignment:
| Q |
12 |
gatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaag |
91 |
Q |
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|||||||| || ||| ||||||||||||||||||||||| |||||||||| | |||||||||||||| ||| |||||||| |
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| T |
12064898 |
gatgcatatttcacatctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaagaag |
12064819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 5568505 - 5568572
Alignment:
| Q |
11 |
agatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttct |
78 |
Q |
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||||||||||||||||||||| |||||| |||| ||| || |||||||||| ||||| ||||| |||| |
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| T |
5568505 |
agatgcatagttaacacctttaagtatgcctgagccaatattgtttgcaaatggtgggatgaaattct |
5568572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 12052108 - 12052030
Alignment:
| Q |
13 |
atgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaag |
91 |
Q |
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| T |
12052108 |
atgcataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaag |
12052030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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