View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19270_low_1 (Length: 1009)
Name: NF19270_low_1
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 832; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 18 - 1001
Target Start/End: Complemental strand, 10255693 - 10254710
Alignment:
| Q |
18 |
aattagtgtcacagtttcctcatcatcttccccatcccatgcgtttatcgcgtgcataatattaaaccctggcacatcaaaccatttcatcttcgactca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255693 |
aattagtgtcacagtttcctcatcatcttccccatcccatgagtttatcgcgtgcataatattaaaccctggcacatcaaaccatttcatcttcgactca |
10255594 |
T |
|
| Q |
118 |
tcactagcatatctcggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255593 |
tcactagcatatctcggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaa |
10255494 |
T |
|
| Q |
218 |
gctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255493 |
gctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaac |
10255394 |
T |
|
| Q |
318 |
accatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255393 |
accatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgca |
10255294 |
T |
|
| Q |
418 |
gtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255293 |
gtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctc |
10255194 |
T |
|
| Q |
518 |
ctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagc |
617 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| ||||| || || |||| || ||||||||| | | |
|
|
| T |
10255193 |
ctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggt |
10255094 |
T |
|
| Q |
618 |
cacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaa |
717 |
Q |
| |
|
|| || |||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255093 |
gacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaa |
10254994 |
T |
|
| Q |
718 |
gtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaa |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10254993 |
gtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaa |
10254894 |
T |
|
| Q |
818 |
ggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaag |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
10254893 |
ggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaag |
10254794 |
T |
|
| Q |
918 |
gactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
1001 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254793 |
gactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10254710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 41 - 1001
Target Start/End: Original strand, 10238935 - 10239895
Alignment:
| Q |
41 |
catcttccccatcccatgcgtttatcgcgtgcataatattaaaccctggcacatcaaaccatttcatcttcgactcatcactagcatatctcggtagaat |
140 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||| |||||||||||||| | | |||||| | |||||||| |
|
|
| T |
10238935 |
catcttcctcatcccatgcgtttatcaaatgcataatattaagcccaggaacatcaaaccacttcatcttcgactcgttatcagcataacgaggtagaat |
10239034 |
T |
|
| Q |
141 |
tccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcg |
240 |
Q |
| |
|
||||||||||| ||| || || |||||||| | |||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||| | |||| |||| |
|
|
| T |
10239035 |
tccgatccttggaactttcgatggatcggaccttaccggggaaccaccgaaaatcatgtcaagaggattaatttcaagctgtatatcagcgaacaaagcg |
10239134 |
T |
|
| Q |
241 |
tattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaat |
340 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||||| |||||||||||||| |
|
|
| T |
10239135 |
tatttttttgtaattgcgaaatcatgaagaaaagaaggtcttttcatggagaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaat |
10239234 |
T |
|
| Q |
341 |
aggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttacc |
440 |
Q |
| |
|
|||||||||| ||| | || ||||||| ||| |||| ||| ||||||||||||| ||||||||| ||||| || |||||| ||||| ||||||| || |
|
|
| T |
10239235 |
aggttaaaaaaggtcgaatgagaccgtagcggtaagcgaaacattcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgcc |
10239334 |
T |
|
| Q |
441 |
gttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagacggttgcca |
540 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239335 |
gttaaaatcataacggcctattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgcca |
10239434 |
T |
|
| Q |
541 |
aacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaac |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239435 |
aacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaac |
10239534 |
T |
|
| Q |
641 |
caataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagag |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
10239535 |
caataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatag |
10239634 |
T |
|
| Q |
741 |
tgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgttt |
840 |
Q |
| |
|
||| ||||||||||||| |||| ||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10239635 |
tgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgttt |
10239734 |
T |
|
| Q |
841 |
cttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggaca |
940 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239735 |
cttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggaca |
10239834 |
T |
|
| Q |
941 |
aaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
1001 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239835 |
aaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10239895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 41 - 1001
Target Start/End: Original strand, 10230155 - 10231115
Alignment:
| Q |
41 |
catcttccccatcccatgcgtttatcgcgtgcataatattaaaccctggcacatcaaaccatttcatcttcgactcatcactagcatatctcggtagaat |
140 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||| ||||||| | |||||||| |
|
|
| T |
10230155 |
catcttcctcatcccatgcgtttatcgtatgcataatattaaaccctggaacatcaaaccacttcatcttggactcgtcattagcataacgaggtagaat |
10230254 |
T |
|
| Q |
141 |
tccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcg |
240 |
Q |
| |
|
||||||||||||||| || || ||||| || | ||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| | |||||||| |
|
|
| T |
10230255 |
tccgatccttgaaactttagatggatccgatctcaccggagaaccaccgaaaatcatgccaagaggattcatttcaagctgtatatcagcgaacacagca |
10230354 |
T |
|
| Q |
241 |
tattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaat |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
10230355 |
tattttttagtaatggcgaaatcatgaagaaacgaaggtcttttcatggagaatactggaacgtcgttatgtttaacaccattcgaatcaaaacggaaat |
10230454 |
T |
|
| Q |
341 |
aggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttacc |
440 |
Q |
| |
|
|||||||||| ||| | || ||||| ||||||||||| ||| ||||| |||||| ||| ||||| ||||| || ||||||||||| ||||||| || |
|
|
| T |
10230455 |
aggttaaaaaaggtcgaatgggaccataacggaaagcgaaacattcacttgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgcc |
10230554 |
T |
|
| Q |
441 |
gttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagacggttgcca |
540 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10230555 |
gttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagtttgacttcataaggaagatctgattctcctaaagcaaaaagacggttacca |
10230654 |
T |
|
| Q |
541 |
aacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaac |
640 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
10230655 |
aacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaag |
10230754 |
T |
|
| Q |
641 |
caataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagag |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||| |||| || ||||||||||| || |
|
|
| T |
10230755 |
caataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttttcaattttgtacttgtaggtttttacataacggctacatag |
10230854 |
T |
|
| Q |
741 |
tgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgttt |
840 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230855 |
tgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgttt |
10230954 |
T |
|
| Q |
841 |
cttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggaca |
940 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10230955 |
cttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagggagttcgtctaggactggtgcaaagttttgggaca |
10231054 |
T |
|
| Q |
941 |
aaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
1001 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10231055 |
aaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtc |
10231115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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