View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_10 (Length: 414)
Name: NF19270_low_10
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 52914456 - 52914802
Alignment:
| Q |
19 |
ataatggtgtttcctgcaccccaatcacaaacgaaattgaaatacgctcaaaaattgaaggttcggtttcaggtgaaggcaacattgatgaaaaacatgg |
118 |
Q |
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| T |
52914456 |
ataatggtgtttcctgcaccccaatcacaaacgaaattgaaatacgctcaaaaattgaaggttcggtttcaagtgaaggcaacattgatgaaaaacatgg |
52914555 |
T |
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| Q |
119 |
tgtcagtgacaatgtatgcaccgtcttttaacacgcattctttctcaatgaatcaaaggttgttggtgcttgatgaattgagtagtagtaaaaatgttgt |
218 |
Q |
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| T |
52914556 |
tgtcagtgacaatgtatgcaccgtcttttaacacgcattctttctcaatgaatcaaaggttgttggtgcttgatgaattgagtagtagtaaaaatgttgt |
52914655 |
T |
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| Q |
219 |
tggagaatcgacatcaacataccaagttgaagtggcaataccaaattcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaa |
318 |
Q |
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| T |
52914656 |
tggagaatcgacatcaacataccaagttgaagtggcaataccaaattcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaa |
52914755 |
T |
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| Q |
319 |
gttccaagtcagggtgtttgggtccaactactttaattttcaactac |
365 |
Q |
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| T |
52914756 |
gttccaagtcagggtgtttgggtccaactactctaattttcaactac |
52914802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 7571549 - 7571646
Alignment:
| Q |
264 |
ttcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactttaattttcaa |
361 |
Q |
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| T |
7571549 |
ttcacctattcttgcgcctcctggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaa |
7571646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 531611 - 531654
Alignment:
| Q |
143 |
cttttaacacgcattctttctcaatgaatcaaaggttgttggtg |
186 |
Q |
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| T |
531611 |
cttttaatacacattcattctcaatgaatcaaaggttgttggtg |
531654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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