View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_11 (Length: 412)
Name: NF19270_low_11
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 30846121 - 30846395
Alignment:
| Q |
12 |
agagagcatggtgaaaaaagaaattgtcaaacttttatcatcaaagtttttggagttagacattcataacaaaaaatatgttgcgatctacacccgtctt |
111 |
Q |
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| T |
30846121 |
agagagcatggtgaaaaaagaaattgtcaaacttttatcatcaaagtttttggagttagacattcataacaaaaaatatgttgcgatctacacccgtctt |
30846220 |
T |
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| Q |
112 |
ttttgctaccacaactcaaaatcaacactagttttatgattatttatttataataacatctgaaaattatgtgtctaaaacacaaatttatagttagcga |
211 |
Q |
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| T |
30846221 |
ttttgctaccacaactcaaaatcaacactagttttatgattatttatttataataacatctgaaaattatgtgtctaaaacacaaatttatagttagcga |
30846320 |
T |
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| Q |
212 |
tgatgcatttctcaaaataatgaaaacaattgttttggcacacaattattcgtttgaagagtttattatatcctt |
286 |
Q |
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| T |
30846321 |
tgatgcatttctcaaaataatgaaaacaattgttttggcacacaattattcgtttcaagagtttattatatcctt |
30846395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 30846406 - 30846491
Alignment:
| Q |
267 |
gaagagtttattatatccttgttagcaagtaaaacaactttacaaaatgaaataaaaaatattttcacaaagaaaatatgttgatt |
352 |
Q |
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| T |
30846406 |
gaagagtttattatatccttgttagcaagtaaaacaactttacaaaatgaaataaaaaatattttcacaaagaaaatatgttgatt |
30846491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 38370711 - 38370667
Alignment:
| Q |
207 |
agcgatgatgcatttctcaaaataatgaaaacaattgttttggca |
251 |
Q |
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| T |
38370711 |
agcgatgatgcaattttgaaaataatgaaaacaattcttttggca |
38370667 |
T |
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