View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_12 (Length: 405)
Name: NF19270_low_12
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 43069243 - 43069605
Alignment:
| Q |
8 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacnnnnnnncttttgaaattcaatcttgta |
107 |
Q |
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| T |
43069243 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacaaaaaaacttttgaaattcaatcttgta |
43069342 |
T |
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| Q |
108 |
agagctttttgtttcatttcatgcacaaaa-tattgaggaaaattttgaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069343 |
agagctttttgtttcatttcatgcacaaaaatattgaggaaaattttgaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
43069442 |
T |
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| Q |
207 |
attctacacgtagatgattgatcacgatgagtgtctcctcactcttatgttttccacatggtgataggatttctagtgtaactgtttggataaaggtgga |
306 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
43069443 |
attctacacgtagatgattgatc---atgagtgtctcctcactcttatgttttccatatggtgatagggtttccagtgtaactgtttggataaaggtgga |
43069539 |
T |
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| Q |
307 |
aatgttagtagta----gtttgttaggtagaaggaaaaggaagtagcacactggttgaatcctgca |
368 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069540 |
aatgttagtagtagtttgtttgttaggtagaaggaaaaggaagtagcacactggttgaatcctgca |
43069605 |
T |
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