View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_13 (Length: 393)
Name: NF19270_low_13
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 50370369 - 50370001
Alignment:
| Q |
9 |
cataggcctttacatcacctagtacatgacttctgannnnnnnacatgattcatattatataattcaaaacagttcaaaaatatttcatattagagcaaa |
108 |
Q |
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| T |
50370369 |
catagacctttacatcacctagtacatgacttctgatttttttacatgattcatattatataattcaaaacagttcaaaaatatttcagattagagcaaa |
50370270 |
T |
|
| Q |
109 |
atgagaaatttggagggcatgtagaaatgagtagggttggaaaaataattctctatttgtcacgtataagatgatatttgggcctctaaaggtgttatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
50370269 |
atgagaaatttggagggcatgtagaaatgagtagggttggaaaaataattctctatttgtcacgtatatgatgatacatgggcctctaaaggtgttatgt |
50370170 |
T |
|
| Q |
209 |
tagcccaactaattatttcccgccaaaaagtggaatacctctttccaataggcacattttcattttcaattgtaaaaaagccgccatattcatcacaatc |
308 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50370169 |
tagcccaaccaattatttcccgccaaaaagtggaatacctctttccaaaaggcacattttcattttcaattgtaaaaaagccgccatattcatcacaatc |
50370070 |
T |
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| Q |
309 |
acaaattcgcgtctgaatcgaaaatggaagtgaatacagagatagttgaagacacccaaatggacgtag |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50370069 |
acaaattcgcgtctgaatcgaaaatggaagtgaatacagagatagttgaagacacccaaatggacgtag |
50370001 |
T |
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