View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_low_15 (Length: 375)

Name: NF19270_low_15
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_low_15
NF19270_low_15
[»] chr1 (7 HSPs)
chr1 (121-284)||(23707603-23707766)
chr1 (293-375)||(23735963-23736045)
chr1 (294-375)||(23618993-23619074)
chr1 (294-375)||(23650338-23650419)
chr1 (20-95)||(23707431-23707505)
chr1 (306-375)||(23626472-23626541)
chr1 (306-375)||(23708198-23708267)
[»] chr3 (6 HSPs)
chr3 (134-275)||(54140207-54140348)
chr3 (121-215)||(52807771-52807865)
chr3 (20-94)||(54140023-54140097)
chr3 (294-354)||(54141120-54141180)
chr3 (225-284)||(52807614-52807673)
chr3 (294-367)||(52807054-52807127)
[»] chr4 (1 HSPs)
chr4 (47-95)||(48431609-48431656)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 121 - 284
Target Start/End: Original strand, 23707603 - 23707766
Alignment:
Q  121 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatc 220  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  23707603 ctgcagctgtctttttaccctaaaatttgaacacagcgttactgaaattttgaagcaaattctaggagatttggaaccattaacaaacttcaactatatc 23707702  T
Q  221 accgactttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 284  Q
    ||  | |||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  23707703 actaaatttcactcatctattctatcaccgaccttgtccccatatcgtgttgcatgtttttttt 23707766  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 23736045 - 23735963
Alignment:
Q  293 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23736045 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 23735963  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 23619074 - 23618993
Alignment:
Q  294 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23619074 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 23618993  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 23650419 - 23650338
Alignment:
Q  294 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23650419 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 23650338  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 23707431 - 23707505
Alignment:
Q  20 ttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttgcaatgccattcgtgtcatc 95  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  23707431 ttactaaggtcctgtttgaaaatgccaatataaatagca-ttttcttttgacgtttgcaatgccattcctgtcatc 23707505  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 23626472 - 23626541
Alignment:
Q  306 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 375  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  23626472 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctctt 23626541  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 23708198 - 23708267
Alignment:
Q  306 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctctt 375  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  23708198 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctctt 23708267  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 54140207 - 54140348
Alignment:
Q  134 tttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcact 233  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||    
T  54140207 tttaccctaaaatttgaacacaatgttactgaaattttgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcact 54140306  T
Q  234 catctgttctatcaccgacctcatccccatatcgtgttgcat 275  Q
    ||| | |||||||||||||||||||||||||| |||||||||    
T  54140307 catatattctatcaccgacctcatccccatattgtgttgcat 54140348  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 52807865 - 52807771
Alignment:
Q  121 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaatt 215  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  52807865 ctgcagctgtctttttaccctaaaatttgaacacaatgtcactgaaattttgaagcaagttctaggagatttgaaatcattaacaaacctcaatt 52807771  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 54140023 - 54140097
Alignment:
Q  20 ttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttgcaatgccattcgtgtcat 94  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  54140023 ttactaaggtccggtttgaaattgccaatataaatagcattcttcttttgacttttgcaatgccattcctgtcat 54140097  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
Q  294 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac 354  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54141120 tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac 54141180  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
Q  225 actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 284  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||| |||||    
T  52807673 actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt 52807614  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 52807127 - 52807054
Alignment:
Q  294 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatg 367  Q
    |||||||||  | ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||| |||||    
T  52807127 tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatg 52807054  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 48431656 - 48431609
Alignment:
Q  47 atataaatagcatttttcttttgacttttgcaatgccattcgtgtcatc 95  Q
    |||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  48431656 atataaatagcatttt-cgtttgacgtttgcaatgccattcctgtcatc 48431609  T

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