View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_low_16 (Length: 372)

Name: NF19270_low_16
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_low_16
NF19270_low_16
[»] chr5 (3 HSPs)
chr5 (265-360)||(36075166-36075261)
chr5 (18-84)||(36074938-36075004)
chr5 (153-213)||(36075073-36075133)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 36075166 - 36075261
Alignment:
Q  265 gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccacgtaatccaaaataatctccattctttatatt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36075166 gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccaagtaatccaaaataatctccattctttatatt 36075261  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 36074938 - 36075004
Alignment:
Q  18 tatgaatcctagcaaccattgttatttggagcaaacagtactatcattgactcctttgatcacggtg 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36074938 tatgaatcctagcaaccattgttatttggagcaaacagtactatcattgaatcctttgatcacggtg 36075004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 36075073 - 36075133
Alignment:
Q  153 gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36075073 gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc 36075133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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