View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_18 (Length: 367)
Name: NF19270_low_18
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 4803759 - 4803415
Alignment:
| Q |
22 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
121 |
Q |
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| T |
4803759 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
4803660 |
T |
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| Q |
122 |
cgcattgcatttttctaataacatctcacttctgtgttc---------------tacactttatttatttataatggtagtttacatctctaagcttctc |
206 |
Q |
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| T |
4803659 |
cgcatagcatttttctaataacatctcacttctgtgttcgataacattgtgttctacactttatttatttataatggtagtttacatctctaagcttctc |
4803560 |
T |
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| Q |
207 |
aaacgtcccatgtggggctagctatcgctatacatatgtttcacaaaacacataatattactaataatttttaaacgtaatactaatagagtgaaattgg |
306 |
Q |
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| T |
4803559 |
aaacgtcccatgtggggctagctatcgctataaatatgtttcacagaacacataa-attactaatactttttaaacgtaatactaatagagtgaaattgg |
4803461 |
T |
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| Q |
307 |
tttttgtgataaatagataatgaagttaacaataagtattactaat |
352 |
Q |
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| T |
4803460 |
tttttgtgataaatagataatgaagttaacaataagtattactaat |
4803415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 4798677 - 4798625
Alignment:
| Q |
170 |
tttatttataatggtagtttacatctctaagcttctcaaacgtcccatgtggg |
222 |
Q |
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| T |
4798677 |
tttatttataatggtagtttacatctctaagtttctcaaacttccgatgtggg |
4798625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 4825482 - 4825401
Alignment:
| Q |
171 |
ttatttataatggtagtttacatctctaagcttctcaaacgtcccatgtggggctagctatcgctatacatatgtttcacaaa |
253 |
Q |
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| T |
4825482 |
ttatttataatggtggtctac-tctctatgcttctgaaacatccgatgtgggacaacctatcgctctacatatgtttcacaaa |
4825401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 4817835 - 4817795
Alignment:
| Q |
170 |
tttatttataatggtagtttacatctctaagcttctcaaac |
210 |
Q |
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| T |
4817835 |
tttatttataatagtagtttacatctctaagtttctcaaac |
4817795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 4804864 - 4804812
Alignment:
| Q |
170 |
tttatttataatggtagtttacatctctaagcttctcaaacgtcccatgtggg |
222 |
Q |
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| T |
4804864 |
tttatttataatgatagtttgcctctctaagattctcaaacatccgatgtggg |
4804812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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