View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_19 (Length: 355)
Name: NF19270_low_19
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 37609914 - 37610249
Alignment:
| Q |
13 |
aatatgaatggtggtctgaagcacttcatggagtctctaacattggtccaggaactcatttttccaatgttatacctgggtcaaccagttttcctatgcc |
112 |
Q |
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| T |
37609914 |
aatatgaatggtggtctgaagcacttcatggagtctctaacattggtccaggaactcatttttccaatgttatacctgggtcaaccagttttcctatgcc |
37610013 |
T |
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| Q |
113 |
tattctcattgcagcttctttcaatgcttccttgtttcaaaccataggaaaggtaaggtttctcttatca-----------ttaatggtgtaaataacat |
201 |
Q |
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| T |
37610014 |
tattctcattgcagcttctttcaatgcttccttgtttcaaaccataggaaaggtaaggtttctcttatcatatcctgcatgttaatggtgtaaataacat |
37610113 |
T |
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| Q |
202 |
gtattgttaactttcaaatggtgttttatggcgaatatgtgtaggtggtttcgacggaagcaagagcaatgcacaatgtagggttagctggtttaacata |
301 |
Q |
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| T |
37610114 |
gtattgttaactttcaaatggtgttttatggcgaatatgtgtaggtggtttcgacggaagcaagagcaatgcacaatgtagggttagctggtttaacata |
37610213 |
T |
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| Q |
302 |
ttggtcaccaaacattaacatatttagggatccaag |
337 |
Q |
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| T |
37610214 |
ttggtcaccaaacattaacatatttagggatccaag |
37610249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 1370325 - 1370232
Alignment:
| Q |
244 |
aggtggtttcgacggaagcaagagcaatgcacaatgtagggttagctggtttaacatattggtcaccaaacattaacatatttagggatccaag |
337 |
Q |
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| T |
1370325 |
aggtggtttcaaatgaagcaagagcaatgtacaatgtagggttggccggtttgacatattggtcaccaaacattaacatattcagagatccaag |
1370232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 1371363 - 1371236
Alignment:
| Q |
15 |
tatgaatggtggtctgaagcacttcatggagtctctaacattggtccaggaactcatttttccaatgttatacctgggtcaaccagttttcctatgccta |
114 |
Q |
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| T |
1371363 |
tatgaatggtggtctgaagcacttcatggagtctctaacattggtcctggcacacatttttcaagtttggttccaggtgctactagttttcctatgccta |
1371264 |
T |
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| Q |
115 |
ttctcattgcagcttctttcaatgcttc |
142 |
Q |
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| T |
1371263 |
ttcttacagcagcttctttcaatacttc |
1371236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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