View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_20 (Length: 349)
Name: NF19270_low_20
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 45819742 - 45820059
Alignment:
| Q |
17 |
aaaaataagtgaattaccgtaatgataattgagtaattgaagtgatgaaccagaagaa-ttgagaattgagaagcgacacttgaagcagagcacgatgta |
115 |
Q |
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| T |
45819742 |
aaaaataagtgaattaccgtaatgataattgagtaactgaagtgatgaaccagaagaaattgagaattgagaagcgacacttgaagcagagcacgatgta |
45819841 |
T |
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| Q |
116 |
gaagagattcttcgagcgctatcttctctgtgtgccgcgctttttcttataatcactttttctctatcggttcttatgttactctgaaaacgagcactgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45819842 |
gaagagattcttcgagcgctatcttctctgtgtgccgcgctttttcttataatcactttttctctatcggttcttatgttactctgaaaacgagcactgc |
45819941 |
T |
|
| Q |
216 |
agcgaaaaatgaggtctcgggtcggaccctttaactttctctgttgagtttgagaattgatattgatattgatatataattgagatgaaagatgttttta |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45819942 |
agcgaaagatgaggtctcgggtcggaccctttaactttctctgttgagtttgaga------attgatattgatatataattgagatgaaagatgttttta |
45820035 |
T |
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| Q |
316 |
tatactttctctctgctctctgtg |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
45820036 |
tatactttctctctgctctctgtg |
45820059 |
T |
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