View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_21 (Length: 346)
Name: NF19270_low_21
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 2749128 - 2748819
Alignment:
| Q |
18 |
attagtgcatgattgatgattatagttctaa-tctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgt |
116 |
Q |
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| T |
2749128 |
attagtgcatgattgatgattatagttctaaatctaaactttctattcttctgaaaacagaaacacaagaatattggtgtatgattgatacgctatctgt |
2749029 |
T |
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| Q |
117 |
aacattattatcctacgcgtaacaaattaaagtcacaggttatagttgcaacattatatataacacacaacagaagagtagccaagtaagttaatattgt |
216 |
Q |
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| T |
2749028 |
aacattattatcctacgcgtaacaaattaaagtcacaggttatagttgcaacattatatataacacataacaaaagagtagccaagtaagttaatattgt |
2748929 |
T |
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| Q |
217 |
tcaaatcaaacactgtttaacacagttacaacatgggtcatggtggaggacaagttgaagaaggacccgatttgcaatatgctcctacatggattgttgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2748928 |
tcaaatcaaacactgtttaacacagttacaacatgggtcatggtggaggacaagttgaagaaggacccgatttgcaatatgctcctacatggattgttgc |
2748829 |
T |
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| Q |
317 |
cctcgtttgc |
326 |
Q |
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||| |||||| |
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| T |
2748828 |
ccttgtttgc |
2748819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 2756964 - 2756883
Alignment:
| Q |
245 |
caacatgggtcatggtggaggacaagttgaagaaggacccgatttgcaatatgctcctacatggattgttgccctcgtttgc |
326 |
Q |
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|||||||||||||||||||||| ||| |||||||||| |||||||||| | | ||||||||| ||||||| || |||||| |
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| T |
2756964 |
caacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacacctacatgggttgttgctcttgtttgc |
2756883 |
T |
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