View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_22 (Length: 337)
Name: NF19270_low_22
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 328
Target Start/End: Complemental strand, 41916526 - 41916200
Alignment:
| Q |
6 |
atgagaaagacaaagatgtgaacaatggttgaagacaaacactaatagatacaaaagagtttaaaggaatcaactttgttaaagaaacaggaatatttgt |
105 |
Q |
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| T |
41916526 |
atgagaaagacaaagatgtgaacaatggttgaagacaaacactaatagatacaaaagagtttaaaggaatcaactttgttaa-gaaacaggaatatttgt |
41916428 |
T |
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| Q |
106 |
ttttgt-----aataaattgttatgttttgcttctggtccacgcaaaacaatgtgagttactctactctagagagtaaagaaaaaccagttcctagatct |
200 |
Q |
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| T |
41916427 |
ttttgttttgtaataaattgttatgttttgcttctggtccacgcaaaacaatgtgagttactctactctagagagtaaagaaaaaccagttcctagatct |
41916328 |
T |
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| Q |
201 |
caaaactaacaaataacnnnnnnnagcttttcatgtgactaggtatgcttcatctgaaatggaaatattaacctggccacagaactagacttgtgtggaa |
300 |
Q |
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| T |
41916327 |
caaaactaacaaacaactttttttagcttttcatgtgactaggtatgcttcatctgaaatggaaatattaacctggccacagaactagacttgtgtggaa |
41916228 |
T |
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| Q |
301 |
agtcaaattatgttctgctgcttctgtg |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41916227 |
agtcaaattatgttctgctgcttctgtg |
41916200 |
T |
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