View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_25 (Length: 312)
Name: NF19270_low_25
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 1249430 - 1249717
Alignment:
| Q |
9 |
agcagagactaaaattgtttgcaagatatataattttgaagatgttaatgcaaattttttcatggagatgaaaaatgaaacttaataatttcatggagac |
108 |
Q |
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| T |
1249430 |
agcagagactaaaattgtttgcaaaatatataattttgaagatgttaatgcaaattttttcatggagatgaaaaatgaaacttaataatttcatggagac |
1249529 |
T |
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| Q |
109 |
aaaaaacgtatttaagttctatagacttgctagattctttgtataggagaggtgtannnnnnnnggaaatatgtttcacgtgtggttgaaattgaaatgc |
208 |
Q |
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| T |
1249530 |
aaaaaacgtatttaagttctatagacttgctagattctttgtataggagaggtgtattttttttggaaatatgtttcacgtgtggttgaaattgaaatgc |
1249629 |
T |
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| Q |
209 |
aagtttatgttttgctaagcaattttggaaggatatatggagtgagtagttgtctgggcattgaatattaatatgtacgtggttcttg |
296 |
Q |
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| T |
1249630 |
aagtttatcttttgctaagcaattttggaaggatatatggagtgagtagttggctgggcattgaatattaatatgtacgtggttcttg |
1249717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 1212487 - 1212455
Alignment:
| Q |
241 |
atatatggagtgagtagttgtctgggcattgaa |
273 |
Q |
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| T |
1212487 |
atatatggagtgagtagttggctgggcattgaa |
1212455 |
T |
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