View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_low_29 (Length: 273)

Name: NF19270_low_29
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_low_29
NF19270_low_29
[»] chr6 (12 HSPs)
chr6 (12-259)||(33643758-33644005)
chr6 (82-258)||(33263394-33263570)
chr6 (82-245)||(33058320-33058483)
chr6 (82-236)||(33401377-33401531)
chr6 (61-234)||(33305223-33305392)
chr6 (82-165)||(33359472-33359555)
chr6 (82-237)||(33286302-33286457)
chr6 (82-251)||(31561970-31562139)
chr6 (82-237)||(9167523-9167678)
chr6 (82-235)||(33272555-33272709)
chr6 (93-237)||(33388809-33388953)
chr6 (87-241)||(33410701-33410855)
[»] chr2 (1 HSPs)
chr2 (62-245)||(17439990-17440170)
[»] chr4 (7 HSPs)
chr4 (84-199)||(31157992-31158107)
chr4 (85-239)||(31503299-31503453)
chr4 (146-199)||(31484024-31484077)
chr4 (84-223)||(31149118-31149257)
chr4 (159-241)||(31498063-31498145)
chr4 (87-239)||(31527180-31527332)
chr4 (84-122)||(31491076-31491114)
[»] scaffold1408 (1 HSPs)
scaffold1408 (81-199)||(1384-1502)
[»] scaffold0428 (1 HSPs)
scaffold0428 (81-199)||(7130-7248)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 33644005 - 33643758
Alignment:
12 atgaaaagccaagaaaaataaatacattactttgattgtatgacaattgtaagataaacattaataatatataagagaatttatattaccttcttgtttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33644005 atgaaaagccaagaaaaataaatacattactttgattgtatgacaattgtaagataaacattaataatatataagagaatttatattaccttcttgtttt 33643906  T
112 tccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33643905 tccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtc 33643806  T
212 aacatatcttaattcctttgaaagacaacttgggctttctaagatatg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
33643805 aacatatcttaattcctttgaaagacaacttgggctttctaagatatg 33643758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 258
Target Start/End: Original strand, 33263394 - 33263570
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||  ||||| |||||||||||||| |||||| |||||| |||||||    
33263394 ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg 33263493  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatat 258  Q
    |||| || |  |||||||   || ||| ||||||||||| ||||  ||||||||||||||||||||| || ||||||    
33263494 caaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatat 33263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 33058320 - 33058483
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||| |||||| ||||||||||||||    
33058320 ataatagaatttatagtaccttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatgg 33058419  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttggg 245  Q
    |||| || || |||||||  ||  ||||| |||| |||||||||  || |||||||| ||||||    
33058420 caaatacttggaaggatatctaaaccagtgaacaaatcttaatttgttcgaaagacagcttggg 33058483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 33401377 - 33401531
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||   |  ||||| |||||||||||||| |||||| |||||| ||| |||    
33401377 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttgttgg 33401476  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaaga 236  Q
    |||| || ||||||||||   |||||| ||||||||||||||||| |||||||||    
33401477 caaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaaga 33401531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 33305223 - 33305392
Alignment:
61 taagataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttg 160  Q
    ||||||||||||||||||||    |||||||||||| ||||||||||||| |||||||||||  ||| |||||  |||| |||| ||||||||||||||     
33305223 taagataaacattaataata----agagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttc 33305318  T
161 attgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaa 234  Q
    |||||| |||||||||||||||||| || | ||||||||   |||||| ||||||||| ||||||  |||||||    
33305319 attggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 33305392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 33359472 - 33359555
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgg 165  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||| |||||    
33359472 ataagagaatttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattgg 33359555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 33286302 - 33286457
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    |||||| |||||||| ||||||||| ||| ||||||||||| ||||||||||  | | ||||| |||||||||||||| |||||| ||||||||||||||    
33286302 ataagataatttatagtaccttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatgg 33286401  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagac 237  Q
    |||| |  ||||||||||   |  ||| | ||||||||||||||  ||||||||||    
33286402 caaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagac 33286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 31562139 - 31561970
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    |||||| |||||| | ||||||||||||| ||||||||||  ||||| ||||  ||  ||||| |||||||||||||| || ||| |||||| |||||||    
31562139 ataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatgg 31562040  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttct 251  Q
    |||| || ||||||||||   | |||| ||||||||||||||||  || ||||||||| | |||||||||    
31562039 caaatacttgaaaggatattcaagccactcaacatatcttaatttgttcgaaagacaattcgggctttct 31561970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 9167523 - 9167678
Alignment:
82 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 181  Q
    |||||||| |||||| |||||| |||||||||||||||||| |||||||||||   ||||||| || || |||||||| |||||  |||||| | |||||    
9167523 ataagagagtttatagtacctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatgg 9167622  T
182 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagac 237  Q
    |||| || ||||||||||   || ||| |||| |||||||||||| || |||||||    
9167623 caaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaagac 9167678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 33272555 - 33272709
Alignment:
82 ataagagaatttatat-taccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatg 180  Q
    |||| ||||||||||  ||||||||||||||||||||||||| | |||| ||| ||| |||||| |||||||| ||| | |||||| |||||| ||| ||    
33272555 ataatagaatttataggtaccttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttg 33272654  T
181 gcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaag 235  Q
    | | |||| ||||||||||   || ||| ||||||||||||||| | ||||||||    
33272655 gtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaag 33272709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 33388809 - 33388953
Alignment:
93 tatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatga 192  Q
    |||| |||||||||||| |||||||||||| | |||| ||| | | |||||| ||| |||||||| | | |||| |||||| ||||||||||| || |||    
33388809 tataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttga 33388908  T
193 aaggatacatatgccagtcaacatatcttaattcctttgaaagac 237  Q
    |||||||   || ||| |||||||||||||||   ||||||||||    
33388909 aaggataataattccactcaacatatcttaatgtgtttgaaagac 33388953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 33410701 - 33410855
Alignment:
87 agaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaac 186  Q
    |||||||||| |||||||||| |||||||||||||| | | | |||| |||||||||| |||||| ||||||| ||| || |||||| || |||||||      
33410701 agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaatt 33410800  T
187 acatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaact 241  Q
     |  |||||||||    | |||||||| ||| |||||||  ||||||||||||||    
33410801 cccagaaaggataatgctcccagtcaaaataccttaatttgtttgaaagacaact 33410855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 245
Target Start/End: Complemental strand, 17440170 - 17439990
Alignment:
62 aagataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttga 161  Q
    ||||||||||||||| |   ||||||||||||||  ||||||||||||||||||||| | | |||||||||||   | ||| | ||||||||| |||| |    
17440170 aagataaacattaatta---ataagagaatttatggtaccttcttgtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttca 17440074  T
162 ttgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttggg 245  Q
    ||||| |||||| ||| ||||||| || ||||||||||  || |||| ||||||||||||||||  || |||||||||||||||    
17440073 ttggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaagacaacttggg 17439990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 31157992 - 31158107
Alignment:
84 aagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggca 183  Q
    ||||||||||||| ||||||||||| ||||||||||||| | | | |||| | | ||| || |||||| |||||||||||||||||||||  || |||||    
31157992 aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca 31158091  T
184 aacacatgaaaggata 199  Q
    || || ||||||||||    
31158092 aatacttgaaaggata 31158107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 31503453 - 31503299
Alignment:
85 agagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaa 184  Q
    |||| ||||| | ||||||||||| || ||||| ||||   ||| ||||  ||||||||| ||| || ||||||||||| ||||||||| |||| |||||    
31503453 agaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaa 31503354  T
185 acacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaa 239  Q
    | || ||||||||||   |  ||| ||||||||||||||||| || |||||||||    
31503353 atacttgaaaggatattcactccattcaacatatcttaattcgttagaaagacaa 31503299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 31484077 - 31484024
Alignment:
146 caattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggata 199  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
31484077 caattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggata 31484024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 31149118 - 31149257
Alignment:
84 aagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggca 183  Q
    |||||||| |||| ||||||||| | ||||||||| ||| | |   |||| | | |||||| |||||| ||||||||||| ||| ||||| |||||||||    
31149118 aagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttgatggca 31149217  T
184 aacacatgaaaggatacatatgccagtcaacatatcttaa 223  Q
    || || ||||||||||  ||| ||| || |||||||||||    
31149218 aatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 31498145 - 31498063
Alignment:
159 tgattgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaact 241  Q
    ||||| ||||||||||||||||| ||| |||||||||||||   |||||| |||| |||||||||||  || |||||||||||    
31498145 tgattaggctgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaact 31498063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 31527180 - 31527332
Alignment:
87 agaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaac 186  Q
    |||||||| ||||||||| ||  || |||||||||| | ||| |||| |  | ||||| ||| || |||||||| | ||| |||||| |||||||||||     
31527180 agaatttagattaccttcgtgccttcccatagttgtttgatgctgctatcttccaagatcaactcaacaagttggtagggttgaaaacttgatggcaaat 31527279  T
187 acatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaa 239  Q
    |||||||||||||     |||| ||||||||||||||||| || |||| ||||    
31527280 acatgaaaggatattcccgccactcaacatatcttaattcattagaaatacaa 31527332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 31491114 - 31491076
Alignment:
84 aagagaatttatattaccttcttgtttttccatagttgt 122  Q
    ||||||||||||| ||||||||||| |||||||||||||    
31491114 aagagaatttatagtaccttcttgtctttccatagttgt 31491076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 1384 - 1502
Alignment:
81 tataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatg 180  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||  |||  ||  ||| | |||||||||||||| |   || |||||| ||||||    
1384 tataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatg 1483  T
181 gcaaacacatgaaaggata 199  Q
    ||| | || ||||||||||    
1484 gcagatacttgaaaggata 1502  T

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Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 7130 - 7248
Alignment:
81 tataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatg 180  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||  |||  ||  ||| | |||||||||||||| |   || |||||| ||||||    
7130 tataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatg 7229  T
181 gcaaacacatgaaaggata 199  Q
    ||| | || ||||||||||    
7230 gcagatacttgaaaggata 7248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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